Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1941
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    28   1.9  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.5  
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    27   3.4  
SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces pom...    27   3.4  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   3.4  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   4.4  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    26   5.9  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    26   5.9  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    26   7.8  

>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
 Frame = +1

Query: 241 GVCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTE--GIS 414
           G+    CL   GC G G  +L+ +  R    +   A     R +  +    E  E  G+ 
Sbjct: 292 GIYGAGCLITEGCRGEGGYLLNSKGERFMERYAPTAKDLASRDVVSRAMTVEIREGRGVG 351

Query: 415 LTVFETFLPLS--PVGLLLQQLP 477
                 +L LS  P  +L ++LP
Sbjct: 352 PEKDHCYLQLSHLPAEILKERLP 374


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +3

Query: 567 RGVGKMDF--SSHTTLKXDKGSNYTGRGRPRDRSP 665
           R +GK +F      T   D GS Y GRGR  D+ P
Sbjct: 345 REIGKENFFIPGEVTSGADFGSIYVGRGRQADQRP 379


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 505 LQEIIGRFVGENHWSHKARH*EGWGRW 585
           ++ I+ R+  E  WS K R    WG W
Sbjct: 143 VRSILSRYHEEQVWSDKIRQASTWGTW 169


>SPBC56F2.03 |||actin-like protein Arp10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 255 SLPVWLWVCWPRKTHAIRTSTKDA 326
           ++P+ LW+C P  T  + TST+DA
Sbjct: 94  NVPITLWICAP-LTAILSTSTRDA 116


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 159 KAVLSTYVKRTCYFFENS 212
           KAV   YV+R CY+ EN+
Sbjct: 271 KAVFDKYVERECYYSENA 288


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 560 VTKRGGEDGLLESHHTEXRQGQQLHR-SRSATRSEPWPKPWTXKNSLP 700
           + K  G    + + H+E   GQ  H    S T+     +P+T KNSLP
Sbjct: 706 IPKMSGRANGMHNFHSEDVTGQSNHALPNSVTKKNGTKQPYT-KNSLP 752


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 586 SIFPTPLSDVLYETNGFLPRIV 521
           S+FPTP S  + E N FL +I+
Sbjct: 193 SVFPTPNSVSIVEENPFLKKII 214


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 586 SIFPTPLSDVLYETNGFLPRIV 521
           S+FPTP S  + E N FL +I+
Sbjct: 193 SVFPTPNSVSIVEENPFLKKII 214


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 21/87 (24%), Positives = 32/87 (36%)
 Frame = +2

Query: 518 SDDSWEKTIGLIKHVTKRGGEDGLLESHHTEXRQGQQLHRSRSATRSEPWPKPWTXKNSL 697
           S  S     G     + R G      S HT     Q +H S S+T +       T  +S 
Sbjct: 533 SSSSSSSRSGSSSSSSSRSGSTSSSGSSHTITSTSQSVHTSGSSTSTSSVAVTSTAYSSS 592

Query: 698 PKGFSSSPXEVTKNSDLLHMAEITQYI 778
               SSS  E + N+  + +  +  +I
Sbjct: 593 SSSSSSSSIESSANAVRVSILGVAAFI 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,366,048
Number of Sequences: 5004
Number of extensions: 70430
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)