Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1941
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 38 0.013
11_06_0653 + 25911162-25911272,25911648-25911694,25912877-259133... 37 0.023
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 34 0.12
04_04_0981 + 29912275-29912814 31 1.2
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273... 30 2.0
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282... 30 2.7
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 29 6.2
03_05_1097 + 30393336-30393578,30393661-30393780,30393859-303940... 28 8.2
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903... 28 8.2
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900... 28 8.2
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 37.5 bits (83), Expect = 0.013
Identities = 20/56 (35%), Positives = 29/56 (51%)
Frame = +2
Query: 410 LASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGG 577
L S+ SY Y +YF+ +GFAK F++ SD+ + LIK+ RGG
Sbjct: 130 LCSVEYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGG 185
>11_06_0653 +
25911162-25911272,25911648-25911694,25912877-25913355,
25914089-25914249,25914324-25914519,25914745-25914807,
25914898-25915047,25915148-25915494
Length = 517
Score = 36.7 bits (81), Expect = 0.023
Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 7/143 (4%)
Frame = +2
Query: 266 LALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKALASLYLKRSYHY 445
L LGV+A ++ Q + +G + ++ Y + N + + L + + H
Sbjct: 181 LKLGVMAADERISQRIQEGITESFAVKDVRGYSTKKNLNPSPCDPVYKLNKIAMNGDRHK 240
Query: 446 LLSAS-------YFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGEDGLLESHH 604
LL + + + Y + E K+ K+SD WE I + T R G + S
Sbjct: 241 LLEKNGIKTVGDFLSFYDRSPEDLRKILGKISDQDWETIISHAQKCTPRPG----IYSSC 296
Query: 605 TEXRQGQQLHRSRSATRSEPWPK 673
+ R G H++ S + + K
Sbjct: 297 IQERNGSDEHQTFSKSNGSCYLK 319
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 34.3 bits (75), Expect = 0.12
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 434 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGG 577
SY Y +YF+ +GFAK F++ SD+ + L+K+ RGG
Sbjct: 106 SYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNMRGG 153
>04_04_0981 + 29912275-29912814
Length = 179
Score = 31.1 bits (67), Expect = 1.2
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = +1
Query: 181 SNALVIFSRIRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRMQ----TDFKSAA 348
S + + R+ I R + G+ S +G G GRG +++ + RP+ + F+ A
Sbjct: 59 SGSAAVVGRVYSLIERERRMGLRSRSVAAGGGGGGRG-IVVRDERPKSRAFGWVSFRKAT 117
Query: 349 LQRVLRPIQGQPRCSERTEGISLTVFETFLP 441
RV+ G R+ +S T ET P
Sbjct: 118 SDRVVEVDDG--AALARSSSVSATAVETRAP 146
>08_02_0210 +
14324539-14324609,14324735-14325740,14325838-14327390,
14327473-14327601,14328345-14328510
Length = 974
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 208 IRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRM 324
IRH +N K+ C +SG C L++S R PRM
Sbjct: 739 IRHRVNLAKHTCTCREWQVSGKPCPHALALIISTRNPRM 777
>11_06_0656 +
25926192-25926289,25927530-25927659,25928248-25928294,
25929274-25929388,25929504-25929753,25930079-25930239,
25930372-25930567,25930672-25930836,25930918-25931070,
25931160-25931248,25931385-25931423,25931460-25931681,
25933503-25934165
Length = 775
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Frame = +2
Query: 272 LGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKALASLYLKRSYHYLL 451
LGV+A ++ + + +G + ++ Y + N + + L+ + H LL
Sbjct: 184 LGVMAADERISERIQEGITESFAVKDVRGYLTKKNPNPSPRDAVYKLSKIAKNGDRHKLL 243
Query: 452 SAS-------YFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGEDGLLES 598
+ + + Y + + K+ K+SD W+ +I H K G+ S
Sbjct: 244 EQNGIKTVEDFLSFYNKSPDDLRKILGKISDQDWDL---IISHALKCNPRPGIYSS 296
>02_05_0702 -
31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 28.7 bits (61), Expect = 6.2
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +2
Query: 383 HVVANELKALASLYLK-RSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKH 559
H+ N++ L ++ R+ +LLSA RE F +K++DD+ + ++
Sbjct: 606 HMTFNDINGLVQQNVQLRNQVHLLSADLDKRDMELRESFQIELKKITDDAASR----VEK 661
Query: 560 VTKRGGEDG-LLESHHTEXRQGQQLHRSRSATRS 658
V K+ E ++ES H ++L + +RS
Sbjct: 662 VMKKSEEQAIMIESLHRSVAMYRKLCEEQQKSRS 695
>03_05_1097 +
30393336-30393578,30393661-30393780,30393859-30394017,
30394184-30394225,30394336-30394508,30394600-30394705,
30394795-30394824
Length = 290
Score = 28.3 bits (60), Expect = 8.2
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 13/113 (11%)
Frame = +2
Query: 296 SCYQNVDQGCRRTLSLPH-----CSAYYGQFKDNHVVANELKALASLYLKRSYHYLLSAS 460
S YQ V + + +PH CSA+Y + +HV + + R+ HYL +
Sbjct: 14 SAYQEVKSSPKHAI-VPHNNLLGCSAFYNPVEGHHVQKPHIVPSCKVNFTRASHYLYRSL 72
Query: 461 YFNNYQTNREGFAKLFRKLSDD-----SWEKTIGLI---KHVTKRGGEDGLLE 595
+ +T R + S D S I L K+V RGG D L E
Sbjct: 73 ---SERTTRHWLHRFHVNASSDEDFRSSRNIAISLFKRYKNVIDRGGGDNLKE 122
>02_04_0157 + 20388761-20388763,20389807-20389935,20390206-20390349,
20390690-20390835,20390915-20391071,20391312-20391370,
20391466-20391664,20392232-20392381,20392471-20392607,
20392717-20392863,20392975-20393076,20395655-20395712,
20395816-20395917,20396236-20396273,20396409-20396535,
20397092-20397259,20397356-20397487,20400222-20400331,
20400400-20400460,20400929-20401106,20401194-20401399,
20401552-20401671,20402523-20402621,20404177-20404386,
20404704-20404843,20404945-20405053,20405351-20405431,
20405523-20405693,20405825-20405974,20407029-20407202,
20407453-20407479,20407688-20407758,20407843-20407942,
20408305-20408361,20409457-20409513,20409656-20409736,
20410336-20410421,20410535-20410649
Length = 1466
Score = 28.3 bits (60), Expect = 8.2
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +1
Query: 163 QYFRHTSNALVIFSRIRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKS 342
QY + T A++I S R + +Y G+ + + CA RGRL E R ++
Sbjct: 839 QYRQQTKAAVIIQSYCRSYLAHSQYMGL--KKAAITTQCAWRGRLARRELRKLKMAAKET 896
Query: 343 AALQRVLRPIQGQ 381
ALQ ++ Q
Sbjct: 897 GALQAAKNKLEKQ 909
>01_04_0143 +
16689471-16689498,16689687-16689818,16689974-16690013,
16690214-16690280,16690349-16690431,16690755-16690821,
16692741-16692821,16693696-16693791,16694172-16694198
Length = 206
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 192 CYFFENSPLNKSHQI*RCMLS-SLPVWLWVC 281
CY E + L++ HQI C ++ S V +W C
Sbjct: 71 CYHLEEADLHQCHQILTCTINGSSLVMIWCC 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,728,832
Number of Sequences: 37544
Number of extensions: 504366
Number of successful extensions: 1412
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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