Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1941
         (850 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    31   1.4  
Z31590-9|CAA83467.2|  581|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL032660-3|CAA21753.2|  581|Caenorhabditis elegans Hypothetical ...    29   3.2  
U88311-8|AAB42341.2|  918|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U40933-2|AAL27242.1|  158|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 416 SLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGG 577
           ++ L  SY YL  + YF+         AK F++ SD+  E    L++    RGG
Sbjct: 21  NIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRGG 74


>Z31590-9|CAA83467.2|  581|Caenorhabditis elegans Hypothetical
           protein R01H10.1 protein.
          Length = 581

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
 Frame = +2

Query: 488 EGFAKLFRKLSDDSWEKTIGLIKHVTKRGGEDGLLE--SHHTEXRQGQQLHRSRSATRSE 661
           EG  K FRK  +D  +  + ++ ++ ++  + G+L     + E +  + +H  RS  +  
Sbjct: 32  EGLCKTFRKSGEDIVDDVVSVMSNLGQKSVDSGILAKLEENLEAQAQKTVHTPRSVKKPA 91

Query: 662 PWPKPWTXKNSLPKGFSSSPXEVTKNSDLLHMAEITQ 772
               P   K+      S  P ++ K S  L  + I +
Sbjct: 92  RGRVPLAEKSGFI--LSGDPDDIEKPSHHLTNSAIAK 126


>AL032660-3|CAA21753.2|  581|Caenorhabditis elegans Hypothetical
           protein R01H10.1 protein.
          Length = 581

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
 Frame = +2

Query: 488 EGFAKLFRKLSDDSWEKTIGLIKHVTKRGGEDGLLE--SHHTEXRQGQQLHRSRSATRSE 661
           EG  K FRK  +D  +  + ++ ++ ++  + G+L     + E +  + +H  RS  +  
Sbjct: 32  EGLCKTFRKSGEDIVDDVVSVMSNLGQKSVDSGILAKLEENLEAQAQKTVHTPRSVKKPA 91

Query: 662 PWPKPWTXKNSLPKGFSSSPXEVTKNSDLLHMAEITQ 772
               P   K+      S  P ++ K S  L  + I +
Sbjct: 92  RGRVPLAEKSGFI--LSGDPDDIEKPSHHLTNSAIAK 126


>U88311-8|AAB42341.2|  918|Caenorhabditis elegans Hypothetical
           protein C10H11.1 protein.
          Length = 918

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +2

Query: 614 RQGQQLHRSRSATRSEP--WPKPWTXKNSLPKGFSSSPXEVTKNSDLLHMAEIT 769
           ++ QQLH+ +   +S P    KP    + L K F S+P     +S L  ++EIT
Sbjct: 73  QRAQQLHQQQQRPQSFPVVQEKPCDITSGLKKFFGSNPTTSGASSSLPKISEIT 126


>U39678-4|AAK39211.2|  330|Caenorhabditis elegans Hypothetical
           protein C39D10.3a protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +1

Query: 289 GRLMLSERRPRMQT----DFKSAALQRVLRPIQGQP 384
           GRLML  ++  M+T    DFKSA L   L P+  +P
Sbjct: 115 GRLMLVTKKHHMETDSILDFKSAILPFALDPLSNEP 150


>U40933-2|AAL27242.1|  158|Caenorhabditis elegans Hypothetical
           protein F20D12.7 protein.
          Length = 158

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 508 EELRESFPVRLVVVEVGGRQEIMVGTFQIQ*G 413
           EE+ E   V LV++ +GGR   +VGT ++  G
Sbjct: 87  EEITEPSSVLLVMITMGGRMANVVGTMKLYKG 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,808,356
Number of Sequences: 27780
Number of extensions: 407741
Number of successful extensions: 1032
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)