Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1939
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    26   5.5  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    26   7.3  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   7.3  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   9.7  

>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +1

Query: 223 TTVLTCSSATAVMHCALLRSRVKAGRPVVHALSTVSPSLL*GHAVSR 363
           TT+L+C + + ++ C  L+S++ A  P + ++      LL G  +S+
Sbjct: 247 TTILSCITISLLIGCRNLKSKLSAKYPRIVSIPDAVIILLLGSFLSK 293


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 450 GVVTPTRHSSRVLNSSCTYPNAK 382
           GV + TR   ++ N+S TYPNAK
Sbjct: 683 GVRSNTRLILKMTNASYTYPNAK 705


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 364 HVTPRVLTRGLG*LWIMRALPASLLSLWNAIMRNALPLW 248
           H   R++ R +   WIM ++  + L +   IMR+ L +W
Sbjct: 688 HQPKRMMDRSVKTFWIMSSISLTFLCISCFIMRHHLFVW 726


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 114 YKKKNMRFPNNY*IYIPFKCLIC 182
           + + + RFP +Y I+ P KC  C
Sbjct: 141 WNEASRRFPYDYKIFFPNKCSTC 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,977
Number of Sequences: 5004
Number of extensions: 60790
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)