Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1939
         (813 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0217 - 21353558-21353660,21354680-21355510,21356340-213564...    31   1.4  
03_02_0581 - 9617039-9617936,9618057-9618502,9618985-9619071,961...    31   1.4  

>11_06_0217 -
           21353558-21353660,21354680-21355510,21356340-21356464,
           21356546-21357076,21357207-21357650,21358469-21358612
          Length = 725

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 22/60 (36%), Positives = 28/60 (46%)
 Frame = +1

Query: 220 STTVLTCSSATAVMHCALLRSRVKAGRPVVHALSTVSPSLL*GHAVSRDARCVILRVWIR 399
           + T LT   A  +   A LR+ V  G  V   L TVSPS   G   ++D  CV  R + R
Sbjct: 298 NVTDLTLRYALRMATRAALRAVVGGGGGVTAVLRTVSPSQYEGGEWNKDGNCVRTRPYRR 357


>03_02_0581 -
           9617039-9617936,9618057-9618502,9618985-9619071,
           9619276-9619416,9620220-9620411,9620491-9620652,
           9621116-9621199,9621329-9621706
          Length = 795

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 673 QSSLGSECPRGHVSITTVCNRKPQGVI 753
           ++ L  ECP G VSI   CNR P G I
Sbjct: 752 RTCLVMECPYGSVSIRQECNRGPSGSI 778


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,041,854
Number of Sequences: 37544
Number of extensions: 396301
Number of successful extensions: 864
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)