Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1939
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55376-1|AAA98003.1|  434|Caenorhabditis elegans Hypothetical pr...    29   5.2  
AF040648-3|AAL06034.2|  453|Caenorhabditis elegans Hypothetical ...    28   9.1  

>U55376-1|AAA98003.1|  434|Caenorhabditis elegans Hypothetical
           protein F16H11.3 protein.
          Length = 434

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +1

Query: 619 WNGNVTIANXNYYGYWFEQSSLGSECPRGHVSITTVCNRKPQGVIKKTXQFI 774
           WN  +TIA   Y  YWF+   + +   +  +   T+ ++ P   I     F+
Sbjct: 40  WNMFITIAPEYYVNYWFKPDGVETWYSKEFMGSLTIASQLPNASINVFNLFL 91


>AF040648-3|AAL06034.2|  453|Caenorhabditis elegans Hypothetical
           protein H19M22.3c protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -3

Query: 556 LLSVWLNCSIHYLETALIFFQ--GQVDELTIDVAYGYRCGNTD 434
           L++  ++ S H L + ++  +  G VDE+T++ A   RC  TD
Sbjct: 41  LVTARISASSHVLPSEVLEVEQTGNVDEMTVEAASKPRCTQTD 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,339,192
Number of Sequences: 27780
Number of extensions: 346678
Number of successful extensions: 873
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)