Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1936
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726...    89   2e-18
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264...    87   6e-18
08_02_0092 + 12265446-12265809,12266147-12266743,12266792-122668...    27   6.3  
04_04_0965 - 29762388-29762564,29764272-29766361,29766567-297671...    27   6.3  
04_01_0380 - 5024280-5024436,5025061-5025155,5053260-5053402,505...    27   8.3  

>07_01_0875 -
           7265529-7265588,7265681-7265746,7266008-7266293,
           7267138-7267142
          Length = 138

 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 39/73 (53%), Positives = 55/73 (75%)
 Frame = +2

Query: 194 KPHTMKLXXALCNDTSLFHWSRLTTXKSLVEWAGLCKIDKDGKARKIVGCSCXVIKDFGE 373
           +P  +KL  ALC + ++ H   + + K+L EWAGLCKID +GKARK+VGCSC V+KDFGE
Sbjct: 65  QPDYVKLVKALCAEHNV-HLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGE 123

Query: 374 ETPXLDVLXDYLK 412
           E+  L+++ DY+K
Sbjct: 124 ESEGLNIVQDYVK 136



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 25/60 (41%), Positives = 33/60 (55%)
 Frame = +1

Query: 103 HGGLVHGLHETAKALDKRQXVLCVLAXNCDEAAYNETXSXSVQRYIIIPLVKVDNXKKLG 282
           H GLV GL E AKA++K    LCVLA +CD+  Y +        +  + LV V + K LG
Sbjct: 35  HDGLVKGLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEH-NVHLVTVPSAKTLG 93


>07_01_0360 +
           2646279-2646283,2647113-2647398,2648043-2648108,
           2648199-2648258
          Length = 138

 Score = 87.4 bits (207), Expect = 6e-18
 Identities = 38/73 (52%), Positives = 55/73 (75%)
 Frame = +2

Query: 194 KPHTMKLXXALCNDTSLFHWSRLTTXKSLVEWAGLCKIDKDGKARKIVGCSCXVIKDFGE 373
           +P  +KL  ALC + ++ H   + + K+L EWAGLCKID +GKARK+VGCSC V+KD+GE
Sbjct: 65  QPDYVKLVKALCAEHNV-HLVTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDYGE 123

Query: 374 ETPXLDVLXDYLK 412
           E+  L+++ DY+K
Sbjct: 124 ESEGLNIVQDYVK 136



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 25/60 (41%), Positives = 33/60 (55%)
 Frame = +1

Query: 103 HGGLVHGLHETAKALDKRQXVLCVLAXNCDEAAYNETXSXSVQRYIIIPLVKVDNXKKLG 282
           H GLV GL E AKA++K    LCVLA +CD+  Y +        +  + LV V + K LG
Sbjct: 35  HDGLVKGLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEH-NVHLVTVPSAKTLG 93


>08_02_0092 +
           12265446-12265809,12266147-12266743,12266792-12266861,
           12267325-12267427
          Length = 377

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +2

Query: 188 VMKPHTMKLXXALCNDTSLFHWSRLTTXKSLVEWAGLCKIDKDGKARKIVGCS 346
           +M+     L  A   D+SL+ WSR    +   EW   C++ K  K   +   S
Sbjct: 215 LMEMENGSLGFACIEDSSLYVWSRKVNSEGAAEWV-QCRVIKLDKMIPVANLS 266


>04_04_0965 - 29762388-29762564,29764272-29766361,29766567-29767170,
            29768395-29768637,29768704-29770203
          Length = 1537

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/18 (72%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -1

Query: 344  SSRQFS-LPCHPCQSCRD 294
            SSR+FS LPC PC S RD
Sbjct: 1207 SSREFSVLPCQPCCSERD 1224


>04_01_0380 -
           5024280-5024436,5025061-5025155,5053260-5053402,
           5053463-5053673
          Length = 201

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +1

Query: 43  GNNMGRECSTASRC*STALIHGGLVHGLHETAKALDKRQXVLCVLAXNCDEAAYNETXSX 222
           GN M  +C T   C    L + G +H   E +++L+ R       A  C++ A  +  + 
Sbjct: 116 GNEMKEDCDTFFMCRFLGLSNSGSLHA-DEVSRSLNARVRRRGYAAGTCEQQAARQQAAG 174

Query: 223 SVQR 234
             Q+
Sbjct: 175 MKQQ 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,130,012
Number of Sequences: 37544
Number of extensions: 202330
Number of successful extensions: 492
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)