Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1936
         (494 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC095424-1|AAH95424.1|  132|Homo sapiens ribosomal protein S12 p...    81   3e-15
BC071930-1|AAH71930.1|  132|Homo sapiens ribosomal protein S12 p...    81   3e-15
BC017321-1|AAH17321.1|  132|Homo sapiens ribosomal protein S12 p...    81   3e-15
AL137783-3|CAC12946.1|  132|Homo sapiens ribosomal protein S12 p...    81   3e-15
AB061840-1|BAB79478.1|  132|Homo sapiens ribosomal protein S12 p...    81   3e-15
X53505-1|CAA37582.1|  132|Homo sapiens ribosomal protein S12 pro...    75   2e-13

>BC095424-1|AAH95424.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score = 80.6 bits (190), Expect = 3e-15
 Identities = 45/119 (37%), Positives = 64/119 (53%)
 Frame = +2

Query: 56  DVNVALQVGAKAQL*SMVXLCTVFTKPLKLLTRGXQYYVFWLXTVMKPHTMKLXXALCND 235
           DVN ALQ   K  L     L     +  K L +   +         +P  +KL  ALC +
Sbjct: 13  DVNTALQEVLKTAL-IHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAE 71

Query: 236 TSLFHWSRLTTXKSLVEWAGLCKIDKDGKARKIVGCSCXVIKDFGEETPXLDVLXDYLK 412
             + +  ++   K L EW GLCKID++GK RK+VGCSC V+KD+G+E+   DV+ +Y K
Sbjct: 72  HQI-NLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>BC071930-1|AAH71930.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score = 80.6 bits (190), Expect = 3e-15
 Identities = 45/119 (37%), Positives = 64/119 (53%)
 Frame = +2

Query: 56  DVNVALQVGAKAQL*SMVXLCTVFTKPLKLLTRGXQYYVFWLXTVMKPHTMKLXXALCND 235
           DVN ALQ   K  L     L     +  K L +   +         +P  +KL  ALC +
Sbjct: 13  DVNTALQEVLKTAL-IHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAE 71

Query: 236 TSLFHWSRLTTXKSLVEWAGLCKIDKDGKARKIVGCSCXVIKDFGEETPXLDVLXDYLK 412
             + +  ++   K L EW GLCKID++GK RK+VGCSC V+KD+G+E+   DV+ +Y K
Sbjct: 72  HQI-NLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>BC017321-1|AAH17321.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score = 80.6 bits (190), Expect = 3e-15
 Identities = 45/119 (37%), Positives = 64/119 (53%)
 Frame = +2

Query: 56  DVNVALQVGAKAQL*SMVXLCTVFTKPLKLLTRGXQYYVFWLXTVMKPHTMKLXXALCND 235
           DVN ALQ   K  L     L     +  K L +   +         +P  +KL  ALC +
Sbjct: 13  DVNTALQEVLKTAL-IHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAE 71

Query: 236 TSLFHWSRLTTXKSLVEWAGLCKIDKDGKARKIVGCSCXVIKDFGEETPXLDVLXDYLK 412
             + +  ++   K L EW GLCKID++GK RK+VGCSC V+KD+G+E+   DV+ +Y K
Sbjct: 72  HQI-NLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>AL137783-3|CAC12946.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score = 80.6 bits (190), Expect = 3e-15
 Identities = 45/119 (37%), Positives = 64/119 (53%)
 Frame = +2

Query: 56  DVNVALQVGAKAQL*SMVXLCTVFTKPLKLLTRGXQYYVFWLXTVMKPHTMKLXXALCND 235
           DVN ALQ   K  L     L     +  K L +   +         +P  +KL  ALC +
Sbjct: 13  DVNTALQEVLKTAL-IHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAE 71

Query: 236 TSLFHWSRLTTXKSLVEWAGLCKIDKDGKARKIVGCSCXVIKDFGEETPXLDVLXDYLK 412
             + +  ++   K L EW GLCKID++GK RK+VGCSC V+KD+G+E+   DV+ +Y K
Sbjct: 72  HQI-NLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>AB061840-1|BAB79478.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score = 80.6 bits (190), Expect = 3e-15
 Identities = 45/119 (37%), Positives = 64/119 (53%)
 Frame = +2

Query: 56  DVNVALQVGAKAQL*SMVXLCTVFTKPLKLLTRGXQYYVFWLXTVMKPHTMKLXXALCND 235
           DVN ALQ   K  L     L     +  K L +   +         +P  +KL  ALC +
Sbjct: 13  DVNTALQEVLKTAL-IHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAE 71

Query: 236 TSLFHWSRLTTXKSLVEWAGLCKIDKDGKARKIVGCSCXVIKDFGEETPXLDVLXDYLK 412
             + +  ++   K L EW GLCKID++GK RK+VGCSC V+KD+G+E+   DV+ +Y K
Sbjct: 72  HQI-NLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


>X53505-1|CAA37582.1|  132|Homo sapiens ribosomal protein S12
           protein.
          Length = 132

 Score = 74.5 bits (175), Expect = 2e-13
 Identities = 43/119 (36%), Positives = 62/119 (52%)
 Frame = +2

Query: 56  DVNVALQVGAKAQL*SMVXLCTVFTKPLKLLTRGXQYYVFWLXTVMKPHTMKLXXALCND 235
           DVN ALQ   K  L     L     +  K L +   +         +P  +KL  AL  +
Sbjct: 13  DVNTALQEVLKTAL-IHDGLARGIREAAKALDKRQAHLCVQASNCDEPMYVKLVEALLAE 71

Query: 236 TSLFHWSRLTTXKSLVEWAGLCKIDKDGKARKIVGCSCXVIKDFGEETPXLDVLXDYLK 412
             + +  ++   K L EW GLCKID++G  RK+VGCSC V+KD+G+E+   DV+ +Y K
Sbjct: 72  HQI-NLIKVDDNKKLGEWVGLCKIDREGNPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,147,459
Number of Sequences: 237096
Number of extensions: 1166554
Number of successful extensions: 1924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1912
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4479766258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)