Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1936
         (494 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X89659-1|CAA61806.1|  151|Drosophila melanogaster 40S ribosomal ...    89   3e-18
AY058531-1|AAL13760.1|  139|Drosophila melanogaster LD23808p pro...    89   3e-18
AE014296-2235|AAN11844.2|  139|Drosophila melanogaster CG11271-P...    89   3e-18
AE014296-2234|AAN11845.1|  139|Drosophila melanogaster CG11271-P...    89   3e-18
BT001803-1|AAN71558.1|  127|Drosophila melanogaster RH29995p pro...    35   0.053
AE014134-2848|AAF53613.2|  327|Drosophila melanogaster CG5050-PA...    28   8.0  

>X89659-1|CAA61806.1|  151|Drosophila melanogaster 40S ribosomal
           protein S12 protein.
          Length = 151

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 51/119 (42%), Positives = 68/119 (57%)
 Frame = +2

Query: 56  DVNVALQVGAKAQL*SMVXLCTVFTKPLKLLTRGXQYYVFWLXTVMKPHTMKLXXALCND 235
           D+N ALQ   K  L +   L     +  K L +          +  +P+  KL  ALCN+
Sbjct: 32  DINTALQEVLKKSLIAD-GLVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNE 90

Query: 236 TSLFHWSRLTTXKSLVEWAGLCKIDKDGKARKIVGCSCXVIKDFGEETPXLDVLXDYLK 412
             +    R+ + K L EW+GLCKIDK+GK RK+ GCS  VIKDFGEETP LDV+ D+L+
Sbjct: 91  HQI-PLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLR 148


>AY058531-1|AAL13760.1|  139|Drosophila melanogaster LD23808p
           protein.
          Length = 139

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 51/119 (42%), Positives = 68/119 (57%)
 Frame = +2

Query: 56  DVNVALQVGAKAQL*SMVXLCTVFTKPLKLLTRGXQYYVFWLXTVMKPHTMKLXXALCND 235
           D+N ALQ   K  L +   L     +  K L +          +  +P+  KL  ALCN+
Sbjct: 20  DINTALQEVLKKSLIAD-GLVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNE 78

Query: 236 TSLFHWSRLTTXKSLVEWAGLCKIDKDGKARKIVGCSCXVIKDFGEETPXLDVLXDYLK 412
             +    R+ + K L EW+GLCKIDK+GK RK+ GCS  VIKDFGEETP LDV+ D+L+
Sbjct: 79  HQI-PLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLR 136


>AE014296-2235|AAN11844.2|  139|Drosophila melanogaster CG11271-PC,
           isoform C protein.
          Length = 139

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 51/119 (42%), Positives = 68/119 (57%)
 Frame = +2

Query: 56  DVNVALQVGAKAQL*SMVXLCTVFTKPLKLLTRGXQYYVFWLXTVMKPHTMKLXXALCND 235
           D+N ALQ   K  L +   L     +  K L +          +  +P+  KL  ALCN+
Sbjct: 20  DINTALQEVLKKSLIAD-GLVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNE 78

Query: 236 TSLFHWSRLTTXKSLVEWAGLCKIDKDGKARKIVGCSCXVIKDFGEETPXLDVLXDYLK 412
             +    R+ + K L EW+GLCKIDK+GK RK+ GCS  VIKDFGEETP LDV+ D+L+
Sbjct: 79  HQI-PLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLR 136


>AE014296-2234|AAN11845.1|  139|Drosophila melanogaster CG11271-PB,
           isoform B protein.
          Length = 139

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 51/119 (42%), Positives = 68/119 (57%)
 Frame = +2

Query: 56  DVNVALQVGAKAQL*SMVXLCTVFTKPLKLLTRGXQYYVFWLXTVMKPHTMKLXXALCND 235
           D+N ALQ   K  L +   L     +  K L +          +  +P+  KL  ALCN+
Sbjct: 20  DINTALQEVLKKSLIAD-GLVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNE 78

Query: 236 TSLFHWSRLTTXKSLVEWAGLCKIDKDGKARKIVGCSCXVIKDFGEETPXLDVLXDYLK 412
             +    R+ + K L EW+GLCKIDK+GK RK+ GCS  VIKDFGEETP LDV+ D+L+
Sbjct: 79  HQI-PLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLR 136


>BT001803-1|AAN71558.1|  127|Drosophila melanogaster RH29995p
           protein.
          Length = 127

 Score = 35.1 bits (77), Expect = 0.053
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = +1

Query: 4   EVEVXVPTN-PILSGNNMGRECSTA-SRC*STALIHGGLVHGLHETAKALDK 153
           +V+V VP+  P+L G     + +TA       +LI  GL+HG+H+  KALDK
Sbjct: 19  DVDVDVPSAAPVLDG---AMDINTALQEVLKKSLIADGLIHGIHQACKALDK 67


>AE014134-2848|AAF53613.2|  327|Drosophila melanogaster CG5050-PA
           protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 345 EQPTIFLALPSLSILQRPAHSTKLFXVVNLDQW 247
           ++  + L++P LSI ++   S KLF +V L  W
Sbjct: 19  DEQRMVLSMPQLSIQRKSVTSMKLFTMVVLHSW 51


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,961,717
Number of Sequences: 53049
Number of extensions: 341519
Number of successful extensions: 670
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1742533632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)