Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1936
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...    59   2e-09
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    27   5.7  

>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 28/71 (39%), Positives = 42/71 (59%)
 Frame = +2

Query: 194 KPHTMKLXXALCNDTSLFHWSRLTTXKSLVEWAGLCKIDKDGKARKIVGCSCXVIKDFGE 373
           +P  +KL   LC +  +    ++   K + E+ GLCK DK+GKARK+VGCS  V+ ++G 
Sbjct: 66  EPQYVKLVETLCAEHQI-PLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGN 124

Query: 374 ETPXLDVLXDY 406
           E     +L DY
Sbjct: 125 EEQGRAILTDY 135



 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 29/58 (50%), Positives = 35/58 (60%)
 Frame = +1

Query: 109 GLVHGLHETAKALDKRQXVLCVLAXNCDEAAYNETXSXSVQRYIIIPLVKVDNXKKLG 282
           GL  GLHET KALDKR+   CVLA NCDE  Y +        +  IPL+KV + K +G
Sbjct: 38  GLAKGLHETCKALDKREAHFCVLAENCDEPQYVKLVETLCAEH-QIPLIKVADKKIIG 94


>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -3

Query: 93   CALAPTCSATFTSHVVTRQDGVGGD 19
            C    TC  TF SHV T  DG  GD
Sbjct: 2322 CDRVATCRNTFGSHVCTCPDGHVGD 2346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,056,337
Number of Sequences: 27780
Number of extensions: 170814
Number of successful extensions: 348
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)