Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1935
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical pr...    31   0.79 
Z19157-1|CAB63418.2|  733|Caenorhabditis elegans Hypothetical pr...    29   4.2  
D86922-1|BAA13180.1|  733|Caenorhabditis elegans cyclic nucleoti...    29   4.2  

>Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical
           protein T09F5.16 protein.
          Length = 311

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 558 LSNGMMHEYIEWSYKAISAELFFLYFMFTYHKY 460
           L  G+MH+  E+    +S + F LYFM  Y KY
Sbjct: 96  LVTGLMHDVNEFLLGLLSIQRFCLYFMPNYEKY 128


>Z19157-1|CAB63418.2|  733|Caenorhabditis elegans Hypothetical
           protein ZC84.2 protein.
          Length = 733

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 551 LDNSINRILMNTYIIICSGWYTYLF*WIYMXLYKCTDMYVLGH 679
           + N+   +++  YI+I   W   L+ WI   +   TD +V GH
Sbjct: 303 MPNAFRVVVVVWYIVIIIHWNACLYFWISEWIGLGTDAWVYGH 345


>D86922-1|BAA13180.1|  733|Caenorhabditis elegans cyclic
           nucleotide-gated channel protein.
          Length = 733

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 551 LDNSINRILMNTYIIICSGWYTYLF*WIYMXLYKCTDMYVLGH 679
           + N+   +++  YI+I   W   L+ WI   +   TD +V GH
Sbjct: 303 MPNAFRVVVVVWYIVIIIHWNACLYFWISEWIGLGTDAWVYGH 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,292,152
Number of Sequences: 27780
Number of extensions: 257058
Number of successful extensions: 674
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)