Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1934
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0904 + 20717005-20718087 29 3.0
06_01_0159 + 1193479-1194435,1194509-1194652,1194735-1194821,119... 29 3.9
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 29 3.9
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70... 29 3.9
01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-70... 29 3.9
09_03_0010 - 11486996-11488073,11488704-11488838,11502017-11502429 28 6.9
03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559 28 6.9
03_04_0174 - 18044516-18046327 28 6.9
11_03_0068 + 9564354-9565180,9566658-9568704 28 9.1
11_03_0061 - 9409470-9409488,9409788-9410265,9410311-9410614 28 9.1
04_04_1421 - 33449539-33449994 28 9.1
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 174 SYKPQPAPTSFSYPQSAAHKPSLSGWQEKP 263
+YKPQP PT P KP+ S + KP
Sbjct: 301 TYKPQPKPTPTPTPYKPQPKPTPSPYTPKP 330
>06_01_0159 +
1193479-1194435,1194509-1194652,1194735-1194821,
1194910-1195244,1195600-1195840,1195921-1195995,
1196072-1196157,1196591-1196663,1196805-1197535,
1197613-1197784,1197862-1197948,1198255-1198344,
1198439-1198549
Length = 1062
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 370 QNNHPSIKKLFKEIMLLSIRTPNKLEQIISR 462
+ NH SI +++++IM + P+K+E ++ R
Sbjct: 478 KQNHSSIVEMYEKIMKTQSQMPSKMESLVDR 508
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 633 PYHQGQSQYTNNGNQYYH 686
P HQG QY NNGN YH
Sbjct: 113 PIHQGNGQYQNNGN--YH 128
>01_01_0090 +
706340-707296,707370-707513,707596-707682,707771-708105,
708462-708702,708783-708857,708932-709017,709451-709523,
709637-709961,710092-711750,711938-713322
Length = 1788
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 370 QNNHPSIKKLFKEIMLLSIRTPNKLEQIISR 462
+ NH SI +++++IM + P+K+E ++ R
Sbjct: 478 KQNHSSIVEMYEKIMKTQSQMPSKMESLVDR 508
>01_01_0089 -
699533-699643,699738-700046,700134-700220,700298-700469,
700547-701373,701487-701559,701993-702078,702153-702227,
702308-702548,702905-703239,703328-703414,703497-703640,
703714-704670
Length = 1167
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 370 QNNHPSIKKLFKEIMLLSIRTPNKLEQIISR 462
+ NH SI +++++IM + P+K+E ++ R
Sbjct: 478 KQNHSSIVEMYEKIMKTQSQMPSKMESLVDR 508
>09_03_0010 - 11486996-11488073,11488704-11488838,11502017-11502429
Length = 541
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +1
Query: 361 TASQNNHPSIKKLFKEIMLLSIRTPNK 441
TA +++ P IKK+FK+++L +T NK
Sbjct: 133 TARRDSAPDIKKVFKDMLLELDKTKNK 159
>03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559
Length = 789
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 183 PQPAPTSFSYPQSAAHKPSL 242
P PAP S + PQ+A H+P L
Sbjct: 11 PPPAPESPTAPQTAVHRPDL 30
>03_04_0174 - 18044516-18046327
Length = 603
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 636 YHQGQSQYTNNGNQYYHXQG 695
YH S Y NN N Y+ QG
Sbjct: 53 YHHSHSHYNNNSNTNYYYQG 72
>11_03_0068 + 9564354-9565180,9566658-9568704
Length = 957
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 349 DCQGTASQNNHPSIKKLFKEIML 417
DCQ S + P I+K+FK I++
Sbjct: 224 DCQAFVSVSQKPDIRKIFKNILI 246
>11_03_0061 - 9409470-9409488,9409788-9410265,9410311-9410614
Length = 266
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 349 DCQGTASQNNHPSIKKLFKEIML 417
DCQ S + P I+K+FK I++
Sbjct: 209 DCQAFVSVSQKPDIRKIFKNILI 231
>04_04_1421 - 33449539-33449994
Length = 151
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 177 YKPQPAPTSFSYPQSAAHKPSLSGW 251
Y QP P ++YP + A +P SG+
Sbjct: 80 YPAQPPPAGYAYPAANAGRPGRSGF 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,164,110
Number of Sequences: 37544
Number of extensions: 299253
Number of successful extensions: 693
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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