Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1931
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1210 + 24903389-24903695,24904383-24904468,24904545-249046...    29   2.8  
01_01_1144 - 9066832-9066935,9067968-9068169,9068265-9068414,906...    29   3.8  
03_02_0630 + 9964593-9964738,9965548-9965603,9965895-9966745,996...    28   5.0  
05_06_0278 + 26894802-26895362                                         28   6.6  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    28   6.6  
08_01_0182 - 1534448-1534557,1534925-1535987                           27   8.7  
04_03_0500 + 16585157-16585201,16586840-16586978,16587456-165875...    27   8.7  

>07_03_1210 +
           24903389-24903695,24904383-24904468,24904545-24904649,
           24904737-24905531,24905719-24905941,24906318-24906712
          Length = 636

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 156 ADGSGVGNIA*TSLWTRWFLRSAVIDWCHSFVPDTGLA 269
           ADG G G  A      +W  R  V+DW  SF+P   LA
Sbjct: 69  ADGGGPGVFA-----RKWRSRREVVDWLASFLPAKSLA 101


>01_01_1144 -
           9066832-9066935,9067968-9068169,9068265-9068414,
           9068553-9068637,9069264-9069343,9069972-9070070
          Length = 239

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/67 (23%), Positives = 35/67 (52%)
 Frame = -3

Query: 253 GTKEWHQSITADLRNHLVHKLVQAIFPTPDPSAMLDKRMHNLVAYARKVEGDMYEMACTR 74
           G  E+ ++I A +R+  +++ +  + P  D ++ + K+M  ++    K+E   + +    
Sbjct: 157 GEVEYAKNICAFVRD--IYRELTLVVPLMDDNSEMKKKMETMLQSVVKIENACFSVHVRG 214

Query: 73  SEYYHLL 53
           SEY  LL
Sbjct: 215 SEYIPLL 221


>03_02_0630 +
           9964593-9964738,9965548-9965603,9965895-9966745,
           9966848-9967046,9967246-9967425,9967591-9967967,
           9968625-9968765
          Length = 649

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/55 (27%), Positives = 32/55 (58%)
 Frame = -3

Query: 328 NIILTQMGTGSLQLPGGAVTANPVSGTKEWHQSITADLRNHLVHKLVQAIFPTPD 164
           ++ ++Q+G+  L      V  +P+ GTK+W  +IT D  + ++++L  A+  + D
Sbjct: 362 SVTVSQVGS-DLPSTTAPVGLSPLGGTKDWQPTITVD-EDGILNQLRTALLHSRD 414


>05_06_0278 + 26894802-26895362
          Length = 186

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -2

Query: 302 GIPPAPGWSRDRQSSIGNEGVAPIDHG*SQKPPSPQTGSSDIPDTRPIGD 153
           G PP P  +R      G +G        +  PPSPQ G S    T+P+ D
Sbjct: 78  GAPPPPQSNRPVTPLAGVDGGVSGGRAPTNTPPSPQPGGS----TKPLSD 123


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -2

Query: 302  GIPPAPGWSRDRQSSIGNEGVAP----IDHG*SQKPPSPQTGSSDIPDTRPIG 156
            GIPP P        ++G+ GVAP    I  G +  PP P  G + +P   PIG
Sbjct: 1080 GIPPLPP---PLPPTLGDYGVAPPPPSIGAG-APPPPPPPGGITGVPPPPPIG 1128


>08_01_0182 - 1534448-1534557,1534925-1535987
          Length = 390

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 307 GTGSLQLPGGAVTANPVSGTK-EWHQSITADLRNHLVHKLVQAIFPTP 167
           G  +  +PGGAV  NP +G +   H        N +V K+V A  PTP
Sbjct: 92  GWVAAHVPGGAVLVNPHTGDEIPLHSFPGGGGNNVVVFKVVFAPNPTP 139


>04_03_0500 +
           16585157-16585201,16586840-16586978,16587456-16587577,
           16588850-16588900,16589289-16589601,16592816-16593162
          Length = 338

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = -3

Query: 265 NPVSGTKEWHQSITADLRNHLVHKLVQAIFPTPDPSAMLDKRMHNLVAYARKVEGDMY 92
           N V+  ++ +  + A  RN   H+ +  +FPT +   +L K   N++  A   + D+Y
Sbjct: 48  NSVAAGEDDNWDLIACARNRSWHQRLPYVFPTKEIEDLLQKLDQNIMMNALPRKMDLY 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,094,955
Number of Sequences: 37544
Number of extensions: 281687
Number of successful extensions: 873
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)