Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1930
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...   137   9e-34
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...   136   1e-33
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...    26   3.2  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   5.6  
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...    25   5.6  
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    24   9.7  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    24   9.7  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    24   9.7  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  137 bits (331), Expect = 9e-34
 Identities = 64/104 (61%), Positives = 82/104 (78%)
 Frame = +3

Query: 15  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 194
           ML+PK+NR AI++ LF++GV+VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 195 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRG 326
            W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R G
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPRAG 103


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score =  136 bits (330), Expect = 1e-33
 Identities = 64/104 (61%), Positives = 81/104 (77%)
 Frame = +3

Query: 15  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 194
           ML+PK+NR AI++ LF +GV+VAKKD++ PKH E+  +PNLQVIKA QSL SRGY+K ++
Sbjct: 1   MLIPKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRY 59

Query: 195 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRG 326
            W  FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R G
Sbjct: 60  NWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPRAG 103


>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1

Query: 373 DLSSAERAGASGRPTGPRRT 314
           DLSSAER  A GRP   + T
Sbjct: 221 DLSSAERVVAGGRPLKDKET 240


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 97  MHRSILN*RRFLTSKLSKLCNHSSPEVM-SKN 189
           +H + L+  RFL + L ++C H+   +M SKN
Sbjct: 895 LHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKN 926


>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 295 RLSVAGTISGGRCKNILKY 239
           R+   G+++GG CK  LK+
Sbjct: 205 RVIYGGSVNGGNCKEFLKF 223


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 379 YADLSSAERAGASGRPTGPRRTVSVRTERLSVAGTISGGRCK 254
           + DL    RA +  RP  PR +  V   ++ +   I+  +C+
Sbjct: 3   FPDLLRCSRAVSLARPDLPRNSPDVYDTKIPILQAITAKKCQ 44


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 265 LLKLCLQHLSAQYVQRQY 318
           LLK+CL  +SA Y+   Y
Sbjct: 123 LLKVCLDEMSASYIDYGY 140


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +3

Query: 99  APKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIF 254
           AP++T+   + N ++ K   + KS   +   +     +W+ T  G+EY++ F
Sbjct: 37  APRYTK-SYMHNAEIYKCFPT-KSNYILSVSYDGYVKFWHKTPNGVEYIKEF 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,353
Number of Sequences: 5004
Number of extensions: 30592
Number of successful extensions: 100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)