Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1930
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 137 5e-33
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 137 5e-33
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 130 7e-31
01_07_0054 - 40779336-40779599,40779734-40779848,40779998-407801... 31 0.59
08_02_0802 + 21386248-21387468 29 2.4
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 28 4.2
08_02_0955 + 22994266-22995630 27 5.5
12_01_0858 + 8072608-8072931,8072990-8073028 27 7.3
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199... 27 7.3
09_03_0062 - 11969719-11970036,11970115-11970843 27 7.3
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331... 27 7.3
06_01_0238 + 1815258-1815581,1816286-1816530,1816612-1816765,181... 27 9.6
05_04_0080 - 17742425-17742578,17742855-17743038,17743202-177432... 27 9.6
01_06_0513 - 29944888-29945943 27 9.6
01_01_0743 - 5763654-5766902 27 9.6
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 137 bits (331), Expect = 5e-33
Identities = 60/97 (61%), Positives = 82/97 (84%)
Frame = +3
Query: 15 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 194
M++PK+NR I +YLF+EGV+ AKKDY+ KH +++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 195 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 305
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSAR 96
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 137 bits (331), Expect = 5e-33
Identities = 60/97 (61%), Positives = 82/97 (84%)
Frame = +3
Query: 15 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 194
M++PK+NR I +YLF+EGV+ AKKDY+ KH +++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQID-VPNLQVIKLMQSFKSKEYVRETF 59
Query: 195 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 305
+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S R
Sbjct: 60 SWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSAR 96
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 130 bits (313), Expect = 7e-31
Identities = 56/97 (57%), Positives = 79/97 (81%)
Frame = +3
Query: 15 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 194
M++ K+NR I +YLF EGV+ AKKDY+ KH +++ +PNL+VIK MQS KS+ YV+E F
Sbjct: 1 MIISKKNRREICKYLFHEGVLYAKKDYNLAKHPKVD-VPNLEVIKLMQSFKSKEYVRETF 59
Query: 195 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 305
+W+H+YWYLTN+GIE+LR +L+LP E+VP TLK+S +
Sbjct: 60 SWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSAK 96
>01_07_0054 -
40779336-40779599,40779734-40779848,40779998-40780181,
40780322-40780393,40780485-40780611,40780830-40781011,
40781099-40781249
Length = 364
Score = 30.7 bits (66), Expect = 0.59
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 45 IYEYLFKEGVMVA-KKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 221
+Y+ L ++G +VA KK + P H + ++ L I+ + GY +E Y Y+
Sbjct: 84 VYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYV 143
Query: 222 TNEGIE-YLRIFLHLP 266
N + +L H P
Sbjct: 144 PNGSVSTHLHGSSHAP 159
>08_02_0802 + 21386248-21387468
Length = 406
Score = 28.7 bits (61), Expect = 2.4
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -1
Query: 451 SXEPGPTSAFLS*GATPGAAGVRLYADLSSAE-RAGASGRPTGPRRTVSVRTERLSVAGT 275
S P P+S F G V DLS A R + RP GPR + R E +++
Sbjct: 123 SGSPEPSSGFFVAVVVDGEM-VLAAGDLSDAAYRRTRARRPAGPRPVLLSRREHVAMRDA 181
Query: 274 ISGGR 260
GGR
Sbjct: 182 GRGGR 186
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 27.9 bits (59), Expect = 4.2
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 144 IKAMQSLKSRGYVKEQFAWRH---FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTET 314
I + L S G WR F+ YLT E I YL +HL + +T RS+ +
Sbjct: 605 ISSNAQLDSPGSANSSPFWRQVEPFFSYLTTEDIAYLSQQIHLSDD---STASRSIEGDE 661
Query: 315 VRR 323
R+
Sbjct: 662 SRK 664
>08_02_0955 + 22994266-22995630
Length = 454
Score = 27.5 bits (58), Expect = 5.5
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = -1
Query: 457 SRSXEPGPTSAFLS*GATPGAAGVRLYADLSSAERAGASGRPTGPRRT 314
SRS P +A LS +TP +A V A S A A R PRR+
Sbjct: 45 SRSKTPPHNAAVLS--STPASAAVDFVAASDSDAGADADARLASPRRS 90
>12_01_0858 + 8072608-8072931,8072990-8073028
Length = 120
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 457 SRSXEPGPTSAFLS*GATPGAAGVRLYADLSSAERAGA 344
+R GP+SA +S G AG + AD + RAGA
Sbjct: 43 ARIWRRGPSSARISVDPAAGTAGAAVAADGQARARAGA 80
>09_04_0560 -
18519024-18519145,18519330-18519435,18519671-18519907,
18521371-18521810,18523215-18525012
Length = 900
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 314 CLCTY*ALKCCRHNFRRKVQEYSQVFNTLIG 222
CL Y +LK R+ ++ QE++ +F+ L G
Sbjct: 804 CLPAYPSLKVTRNQLQKITQEHASIFHILSG 834
>09_03_0062 - 11969719-11970036,11970115-11970843
Length = 348
Score = 27.1 bits (57), Expect = 7.3
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 237 QYPHWLGTSKSASRQ 193
Q+PHWLGT+ AS++
Sbjct: 172 QHPHWLGTAGYASKE 186
>08_02_1418 -
26931896-26932339,26932435-26932668,26932805-26933110,
26933462-26933644,26934386-26934493
Length = 424
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 281 RHNFRRKVQEYSQVFNTLIG*VPVKVPPGKLFFDITSGLE 162
R+NFR KV+E S F + +G PP K+ D+ G++
Sbjct: 314 RNNFRAKVKEDSATFPSSLGMGRALSPP-KMSVDLEMGMK 352
>06_01_0238 +
1815258-1815581,1816286-1816530,1816612-1816765,
1817043-1817257,1817351-1817468,1817685-1817895,
1818133-1818194,1818306-1818524
Length = 515
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 394 AGVRLYADLSSAERAGASGRPTGPRRTVSVRTERLSVAGTISGG 263
A V L+AD +A R AS R R V++RTE + ++ G
Sbjct: 408 AVVALFADGPTAIRDVASWRVKETERMVAIRTELTKLGASVEEG 451
>05_04_0080 -
17742425-17742578,17742855-17743038,17743202-17743273,
17743343-17743469,17743915-17744135,17744234-17744387
Length = 303
Score = 26.6 bits (56), Expect = 9.6
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 45 IYEYLFKEGVMVA-KKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYL 221
+Y+ L +G +VA KK AP+ E++ L I + GY +E Y YL
Sbjct: 98 VYKGLLLDGSVVAIKKRIGAPRQEFAEEVRKLSEINHRNIVTLIGYCQEGGLQMLVYEYL 157
Query: 222 TNEGI 236
N +
Sbjct: 158 PNGSV 162
>01_06_0513 - 29944888-29945943
Length = 351
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = -1
Query: 451 SXEPGPTSAFLS*GATPGAAGVRLYADLSSAERAGASGRPTGPRR 317
S EP P+S + GA P AA S +G S P RR
Sbjct: 20 SPEPNPSSPLMDDGAAPAAAAAAELPS-PSPSSSGTSPSPRSKRR 63
>01_01_0743 - 5763654-5766902
Length = 1082
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 373 DLSSAERAGASGRPTGPRRTVSVRTERLSVAGTI 272
+ +SA R + R PR V V+ ERL AG +
Sbjct: 44 EAASAPRGAKNSRSRAPRTDVDVQIERLCRAGEL 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,336,471
Number of Sequences: 37544
Number of extensions: 205627
Number of successful extensions: 598
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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