Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1930
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal pr...   129   1e-30
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n...    29   1.6  
AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine re...    27   8.7  

>AF003151-12|AAK18912.1|  149|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 10 protein.
          Length = 149

 Score =  129 bits (311), Expect = 1e-30
 Identities = 62/108 (57%), Positives = 76/108 (70%), Gaps = 3/108 (2%)
 Frame = +3

Query: 15  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 194
           M +PK +   IYEYLF EGV VAKKD++A  H  +E + NL+VIK ++SL SR  VKEQF
Sbjct: 1   MFIPKSHTKLIYEYLFNEGVTVAKKDFNAKTHPNIEGVSNLEVIKTLKSLASRELVKEQF 60

Query: 195 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLK---RSVRTETVRRGP 329
           AWRH+YWYLT+ GI YLR +L LP EIVPAT+K   R +R     R P
Sbjct: 61  AWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPREIRVPHEDRAP 108


>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
            isoform a protein.
          Length = 1702

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 459  IQDQXSLDQHQPFYHEVQHQGQQE 388
            +Q+Q +  Q Q F H+ QHQ QQE
Sbjct: 1183 MQEQSNEQQSQVFQHQHQHQAQQE 1206


>AF078792-2|AAC26946.1|  512|Caenorhabditis elegans Hypothetical
           protein Y40D12A.2 protein.
          Length = 512

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 99  APKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNE 230
           AP   ++  +PNL   + ++S    GY+      + FYWY+ +E
Sbjct: 16  APADQQITSLPNLT--EPLRSKHYAGYLSISDVKQLFYWYVESE 57


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 409 ATPGAAGVRLYADLSSAERAGASGRPTGPRRTVSVRT 299
           +T GAA  R      SA RA  S  P GP R  + R+
Sbjct: 305 STTGAARTRPAVPAVSAPRALTSRAPAGPARPTTTRS 341


>AF016664-1|AAB66070.2|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein77 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 129 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP--EIVPATLKRS 299
           P +QV+  +  +    ++ E      F W+ T+  I  + +F+  PP  +I+   LK++
Sbjct: 257 PMIQVLILVFEIPQMNFISELI----FAWFATHSSINMVSLFIFFPPYRKIIAKGLKKT 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,551,207
Number of Sequences: 27780
Number of extensions: 181833
Number of successful extensions: 504
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)