Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1929
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    29   0.59 
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    26   7.3  
SPACUNK4.17 |||NAD binding dehydrogenase family protein|Schizosa...    25   9.6  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    25   9.6  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    25   9.6  

>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +1

Query: 361 WYFLLLGR-VDNRTSHFMLSSIPRHEIHVS--VSAXTSXKGLPHPSNRNARLLHGRNGQS 531
           +Y   +GR +   T+   L++ PRH ++ +   S       LP P+    R + G N  S
Sbjct: 343 FYEKAMGRAIQQATAAEPLATPPRHPLNATNGTSQSNISTPLPEPTPGQPRKVSGHNPPS 402

Query: 532 CGNLPALNNLSYLRILKS 585
              LP+ +++ +   LK+
Sbjct: 403 ARRLPSASSVKFNEKLKN 420


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 298 VGHNCEPIKLGNLLRISSHGLW 363
           + HN    K GNLLR SS  LW
Sbjct: 777 IRHNARRNKSGNLLRRSSTKLW 798


>SPACUNK4.17 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 388 PPAQAIKNTRAHGWRYGEGYLILWAHNCAL 299
           PP + I    A  W+Y +G +  + HN  L
Sbjct: 285 PPEERIPRFTAASWKYKDGGVGAFTHNITL 314


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 164  NPRLSVNEDRVGVLVTEITKAVSQMLLL 81
            N  LS++E   GVL TE+ +A  Q+ ++
Sbjct: 966  NESLSLHEQIYGVLHTEVARAYCQLAMI 993


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 138 SCWSSRDRDYKGCLTNALINIIS 70
           S W SRD  +  C T  L N+IS
Sbjct: 123 SVWVSRDESFVRCYTRFLGNLIS 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,990
Number of Sequences: 5004
Number of extensions: 59945
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)