Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1929
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0044 + 301981-302826,302972-303580                               29   3.3  
02_02_0069 + 6540364-6540878,6541332-6541406,6541818-6541896           29   3.3  
05_01_0055 - 390371-390457,390637-390715,390804-390856,390951-39...    29   5.8  
02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732     28   7.6  
01_06_1743 + 39601644-39602023,39602301-39602734,39602828-396030...    28   7.6  

>08_01_0044 + 301981-302826,302972-303580
          Length = 484

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 391 NRTSHFMLSSIPRHEIHVSVSAXTSXKG-LPHPSNRNARLLHGRNG 525
           +R S  +LS +P   + + V       G LPH S R+    HGR+G
Sbjct: 4   DRNSELLLSKLPSPPLRLPVIGHMHLVGSLPHVSLRDLAAKHGRDG 49


>02_02_0069 + 6540364-6540878,6541332-6541406,6541818-6541896
          Length = 222

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 374 CLGGWTTARLTLCSHPSLDMRSTSQFLQXQAQK 472
           C G W+TAR ++C  P     + +  LQ +++K
Sbjct: 135 CAGWWSTARFSICVRPLQGKSAQTMDLQSRSEK 167


>05_01_0055 -
           390371-390457,390637-390715,390804-390856,390951-391105,
           391216-391422,391518-391658,392044-392202,392296-392476,
           393153-393252,393321-393470,393581-393705,394006-394096,
           394364-394472,394558-394657,395143-395307,395401-395506,
           395590-395894,396003-396241,397036-397114,397189-397327,
           398004-398054,398316-398770,398961-399158,399199-399261,
           400212-400436,400706-400988,401109-401170
          Length = 1368

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 158 ADYFELLRNIIIATVKQCIHIYNYNVLILRYK 253
           ADYF+ L +++I  +   I IYN N  ++ YK
Sbjct: 186 ADYFQKLAHLLIIYLTPSIMIYNLNKNMVYYK 217


>02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732
          Length = 1050

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
 Frame = +1

Query: 316 PIKLGNLLRISSHGLWYFLLLGRVDNRTSHFMLSSIPRHEIHVSVSAXTSXKGLPHPSNR 495
           P  LGNL R+S+  +W   L G +     +     +    +++S +  T    +P+    
Sbjct: 299 PNSLGNLPRLSTLSVWRNQLSGCISQELGNL----VNLENLYLSENMFTG--SIPNSLGN 352

Query: 496 NARL--LHGRNGQSCGNLP-ALNNLSYLRILKSLETNI 600
             +L  LH R+ Q  G++P  +++L  L IL   + N+
Sbjct: 353 LTKLTALHIRSNQLSGSIPKEISSLMNLNILHIDQNNL 390


>01_06_1743 +
           39601644-39602023,39602301-39602734,39602828-39603006,
           39603636-39603716,39603828-39603914,39604000-39604006,
           39604241-39604312,39604712-39604792,39605156-39605262
          Length = 475

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 445 SVSAXTSXKGLPHPSNRNARLLHGRNGQSCGNLPALNNLSYL 570
           SVSA  S +    P++ N R +HG  G++    P   N  +L
Sbjct: 425 SVSASGSSQDAKKPNSNNQRPVHGNGGKTSDETPRGKNKYFL 466


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,123,287
Number of Sequences: 37544
Number of extensions: 366442
Number of successful extensions: 862
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)