Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1927
(350 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 76 6e-15
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 76 6e-15
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 76 6e-15
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 54 4e-08
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 54 4e-08
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 52 2e-07
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 52 2e-07
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 52 2e-07
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 48 1e-06
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 48 1e-06
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 48 1e-06
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 48 1e-06
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 46 6e-06
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 43 5e-05
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 43 7e-05
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 42 9e-05
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 42 1e-04
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 42 1e-04
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 42 1e-04
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 40 5e-04
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 40 7e-04
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 40 7e-04
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 39 0.001
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 39 0.001
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 38 0.002
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 38 0.002
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 38 0.002
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 38 0.002
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 37 0.004
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 36 0.008
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 36 0.008
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 36 0.011
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 36 0.011
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 36 0.011
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 36 0.011
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 36 0.011
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 36 0.011
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 36 0.011
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 36 0.011
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 36 0.011
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 36 0.011
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 35 0.014
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 34 0.025
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 34 0.033
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 34 0.033
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 34 0.033
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 34 0.033
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 34 0.033
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 33 0.043
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.043
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.043
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 33 0.043
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 33 0.043
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 33 0.043
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 33 0.043
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 33 0.057
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 33 0.057
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 33 0.057
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 33 0.057
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 33 0.057
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 33 0.057
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 33 0.057
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 33 0.057
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 33 0.057
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 33 0.057
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 33 0.076
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 32 0.13
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 32 0.13
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 32 0.13
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 31 0.31
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 31 0.31
U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical p... 30 0.41
U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical p... 30 0.41
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 29 0.71
U39853-2|AAK39225.1| 771|Caenorhabditis elegans Kinase suppress... 29 0.71
U38820-1|AAA92436.1| 771|Caenorhabditis elegans KSR-1 protein. 29 0.71
S80647-1|AAB35769.1| 771|Caenorhabditis elegans KSR-1 protein. 29 0.71
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 29 1.2
AF038618-2|AAB92072.1| 487|Caenorhabditis elegans Hypothetical ... 28 1.6
Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 28 2.2
Z70308-9|CAA94346.2| 402|Caenorhabditis elegans Hypothetical pr... 28 2.2
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 28 2.2
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 27 3.8
Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z46793-2|CAA86771.1| 322|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr... 26 6.6
AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein. 26 6.6
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein. 26 6.6
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 26 8.7
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 26 8.7
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 26 8.7
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 26 8.7
AC006744-3|AAF60507.1| 126|Caenorhabditis elegans Hypothetical ... 26 8.7
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 76.2 bits (179), Expect = 6e-15
Identities = 30/68 (44%), Positives = 49/68 (72%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 180
VGGL ++LE FD++G++ VWVA PPGFAF+E++++++AEDA A++G+ + G
Sbjct: 7 VGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICG 66
Query: 181 ATLKVEIS 204
+VE+S
Sbjct: 67 VRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 76.2 bits (179), Expect = 6e-15
Identities = 30/68 (44%), Positives = 49/68 (72%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 180
VGGL ++LE FD++G++ VWVA PPGFAF+E++++++AEDA A++G+ + G
Sbjct: 7 VGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICG 66
Query: 181 ATLKVEIS 204
+VE+S
Sbjct: 67 VRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 76.2 bits (179), Expect = 6e-15
Identities = 30/68 (44%), Positives = 49/68 (72%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 180
VGGL ++LE FD++G++ VWVA PPGFAF+E++++++AEDA A++G+ + G
Sbjct: 7 VGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICG 66
Query: 181 ATLKVEIS 204
+VE+S
Sbjct: 67 VRARVELS 74
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 53.6 bits (123), Expect = 4e-08
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-PGFAFIEFENLQEAEDACSAMNGTEML 177
VG L ++++++E F KYG++ V + P FAF+EFE+ ++AEDA A +G E
Sbjct: 13 VGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFD 72
Query: 178 GATLKVEISR 207
G ++VE +R
Sbjct: 73 GRRIRVEFTR 82
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 53.6 bits (123), Expect = 4e-08
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-PGFAFIEFENLQEAEDACSAMNGTEML 177
VG L ++++++E F KYG++ V + P FAF+EFE+ ++AEDA A +G E
Sbjct: 13 VGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFD 72
Query: 178 GATLKVEISR 207
G ++VE +R
Sbjct: 73 GRRIRVEFTR 82
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 51.6 bits (118), Expect = 2e-07
Identities = 23/71 (32%), Positives = 45/71 (63%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 180
+G + ++ D+ER YGK+N++ + GFAF++FE+ ++AEDAC ++G M G
Sbjct: 6 LGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKTMEG 62
Query: 181 ATLKVEISRKR 213
+++++ + R
Sbjct: 63 SSMRLVVEMAR 73
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 51.6 bits (118), Expect = 2e-07
Identities = 23/71 (32%), Positives = 45/71 (63%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 180
+G + ++ D+ER YGK+N++ + GFAF++FE+ ++AEDAC ++G M G
Sbjct: 6 LGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKTMEG 62
Query: 181 ATLKVEISRKR 213
+++++ + R
Sbjct: 63 SSMRLVVEMAR 73
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 51.6 bits (118), Expect = 2e-07
Identities = 23/71 (32%), Positives = 45/71 (63%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 180
+G + ++ D+ER YGK+N++ + GFAF++FE+ ++AEDAC ++G M G
Sbjct: 6 LGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKTMEG 62
Query: 181 ATLKVEISRKR 213
+++++ + R
Sbjct: 63 SSMRLVVEMAR 73
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 48.4 bits (110), Expect = 1e-06
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +1
Query: 37 LEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 201
+E F G + S+W+A PPGFAF+ F+ A DA +NG ++ KVE+
Sbjct: 44 IEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHAFDAVKYLNGKKICDLEAKVEM 98
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/71 (33%), Positives = 42/71 (59%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 180
+G L + ++D+E F YG++ V L GF F+EF++ ++AEDA +NG E+ G
Sbjct: 7 IGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
Query: 181 ATLKVEISRKR 213
+ ++ S+ R
Sbjct: 64 ERVILDYSKPR 74
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/71 (33%), Positives = 42/71 (59%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 180
+G L + ++D+E F YG++ V L GF F+EF++ ++AEDA +NG E+ G
Sbjct: 7 IGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
Query: 181 ATLKVEISRKR 213
+ ++ S+ R
Sbjct: 64 ERVILDYSKPR 74
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 48.4 bits (110), Expect = 1e-06
Identities = 24/71 (33%), Positives = 42/71 (59%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 180
+G L + ++D+E F YG++ V L GF F+EF++ ++AEDA +NG E+ G
Sbjct: 7 IGRLTSRVSEKDIEHFFRGYGQIRDV---LLKNGFGFVEFDDKRDAEDAVHDLNGKELGG 63
Query: 181 ATLKVEISRKR 213
+ ++ S+ R
Sbjct: 64 ERVILDYSKPR 74
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 46.4 bits (105), Expect = 6e-06
Identities = 23/71 (32%), Positives = 40/71 (56%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 180
+G L D+E F YGKL+ V + GF F++F++ ++A+DA +NG E+ G
Sbjct: 6 IGRLPNRASDRDVEHFFRGYGKLSDV---IMKNGFGFVDFQDQRDADDAVHDLNGKELCG 62
Query: 181 ATLKVEISRKR 213
+ +E R++
Sbjct: 63 ERVILEFPRRK 73
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 43.2 bits (97), Expect = 5e-05
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNG 165
V + E ++D+ +F +YGK+ ++ + L+ G+A +E+E +EA +A N
Sbjct: 59 VTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQSND 118
Query: 166 TEMLGATLKVE 198
T++LG +KV+
Sbjct: 119 TDLLGQNVKVD 129
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 42.7 bits (96), Expect = 7e-05
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Frame = +1
Query: 28 KEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 192
+E+L F G++N+V + + P GFAFIEF A+ A MNG E G L+
Sbjct: 18 EEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLR 77
Query: 193 VEISRK 210
V ++ K
Sbjct: 78 VNLANK 83
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 42.3 bits (95), Expect = 9e-05
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 28 KEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 198
KE LE+ F K+G + S V GF F+ F N +EAE A A++ + + G LK+
Sbjct: 226 KETLEKVFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLH 285
Query: 199 ISR 207
+ R
Sbjct: 286 VCR 288
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 41.9 bits (94), Expect = 1e-04
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 28 KEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 198
KE LE+ F K+G + S V GF F+ F N +EAE A A++ + + G LK+
Sbjct: 166 KETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLH 225
Query: 199 ISR 207
+ R
Sbjct: 226 VCR 228
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 41.9 bits (94), Expect = 1e-04
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 28 KEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 198
KE LE+ F K+G + S V GF F+ F N +EAE A A++ + + G LK+
Sbjct: 163 KETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLH 222
Query: 199 ISR 207
+ R
Sbjct: 223 VCR 225
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 41.9 bits (94), Expect = 1e-04
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 28 KEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 198
KE LE+ F K+G + S V GF F+ F N +EAE A A++ + + G LK+
Sbjct: 226 KETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLH 285
Query: 199 ISR 207
+ R
Sbjct: 286 VCR 288
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 39.9 bits (89), Expect = 5e-04
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNG 165
VGG E + ++ L F +G + ++ + ++ GF F+EF+ ++A A MN
Sbjct: 15 VGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAMAIDNMNE 74
Query: 166 TEMLGATLKVEISR 207
+E+ G T++V +R
Sbjct: 75 SELFGKTIRVNFAR 88
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 39.5 bits (88), Expect = 7e-04
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNG 165
VG + + ++ + F K G + S+ + + P G+ FIEF ++Q AE A +NG
Sbjct: 22 VGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNG 81
Query: 166 TEMLGATLKVE 198
E+ G L+V+
Sbjct: 82 YELSGRILRVD 92
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 39.5 bits (88), Expect = 7e-04
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNG 165
V L + + +++L F K G++ +++A + P GFAF+ FE+ +A A + +N
Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239
Query: 166 TEMLGATLKVEISR 207
M LKVE +R
Sbjct: 240 IRMYHMVLKVEWTR 253
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 38.7 bits (86), Expect = 0.001
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWV----ALNPPGFAFIEFENLQEAEDACSAMNGT 168
VG + + L REF+ YGK+ + + A P G+AFIE+ + E A +G
Sbjct: 108 VGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKADGI 167
Query: 169 EMLGATLKVEISRKR 213
++ G L V+ R R
Sbjct: 168 KVDGKRLVVDYERGR 182
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +1
Query: 7 GLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGAT 186
G + + ++++ R FD++G +N V G+AF++FE + A A MN ++ G
Sbjct: 261 GNIANLGEDEIRRAFDRFGPINEVRT-FKIQGYAFVKFETKESAARAIVQMNNADIGGQI 319
Query: 187 LKVEISRKRD 216
++ + D
Sbjct: 320 VRCSWGKSGD 329
Score = 30.3 bits (65), Expect = 0.41
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYG---KLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTE 171
V L I E L F++ G K ++ LN P +AF+EF + +A A + NG E
Sbjct: 44 VANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDP-YAFVEFSDHNQATLALQSHNGRE 102
Query: 172 MLGATLKV 195
+L + V
Sbjct: 103 LLEKEMHV 110
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 38.3 bits (85), Expect = 0.002
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +1
Query: 28 KEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 192
++DL F + G +++V + + P GFAF+EF A+ A NG + G L+
Sbjct: 17 EDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALR 76
Query: 193 VEISRKRD 216
V +++ R+
Sbjct: 77 VNLAQNRN 84
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 38.3 bits (85), Expect = 0.002
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNG 165
VG + I+++ L R FD +G + S+ ++ +P FAF+E+E + A A +MNG
Sbjct: 106 VGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNG 165
Query: 166 TEMLGATLKV 195
+ G LKV
Sbjct: 166 QMLGGRNLKV 175
Score = 31.5 bits (68), Expect = 0.18
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +1
Query: 22 IKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGAT 186
+ + DL+ F+ +G++ +A P G F ++EF NL +A + MN ++ G
Sbjct: 218 LSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQY 277
Query: 187 LK 192
L+
Sbjct: 278 LR 279
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 38.3 bits (85), Expect = 0.002
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNG 165
VG + I+++ L R FD +G + S+ ++ +P FAF+E+E + A A +MNG
Sbjct: 106 VGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNG 165
Query: 166 TEMLGATLKV 195
+ G LKV
Sbjct: 166 QMLGGRNLKV 175
Score = 33.1 bits (72), Expect = 0.057
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +1
Query: 22 IKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGAT 186
+ + DL+ F+ +G++ +A P G F ++EF NL +A + MN ++ G
Sbjct: 218 LSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQY 277
Query: 187 LKV 195
L+V
Sbjct: 278 LRV 280
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 38.3 bits (85), Expect = 0.002
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNG 165
VG + I+++ L R FD +G + S+ ++ +P FAF+E+E + A A +MNG
Sbjct: 106 VGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNG 165
Query: 166 TEMLGATLKV 195
+ G LKV
Sbjct: 166 QMLGGRNLKV 175
Score = 33.1 bits (72), Expect = 0.057
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +1
Query: 22 IKKEDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGAT 186
+ + DL+ F+ +G++ +A P G F ++EF NL +A + MN ++ G
Sbjct: 218 LSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAGMNMFDLGGQY 277
Query: 187 LKV 195
L+V
Sbjct: 278 LRV 280
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 37.1 bits (82), Expect = 0.004
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 100 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRD 216
GFA++ FEN Q+ A S +NG + LKV +++RD
Sbjct: 54 GFAYVTFENEQQMNTAISGLNGADFGNRVLKVNRAQQRD 92
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 35.9 bits (79), Expect = 0.008
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +1
Query: 25 KKEDLEREFDKYGKLNSVWVALNP---PGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 195
++ DL F+K G + V + N GF F+ +N +A+ A + NGT + G ++V
Sbjct: 112 REPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEV 171
Query: 196 EISRKR 213
++ +R
Sbjct: 172 NLATQR 177
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 35.9 bits (79), Expect = 0.008
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +1
Query: 25 KKEDLEREFDKYGKLNSVWVALNP---PGFAFIEFENLQEAEDACSAMNGTEMLGATLKV 195
++ DL F+K G + V + N GF F+ +N +A+ A + NGT + G ++V
Sbjct: 112 REPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEV 171
Query: 196 EISRKR 213
++ +R
Sbjct: 172 NLATQR 177
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 35.5 bits (78), Expect = 0.011
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 103 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 213
F F+ +EN Q A +A SAMNG ++ LKV++ R
Sbjct: 378 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 414
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 35.5 bits (78), Expect = 0.011
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 103 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 213
F F+ +EN Q A +A SAMNG ++ LKV++ R
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 578
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 35.5 bits (78), Expect = 0.011
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 103 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 213
F F+ +EN Q A +A SAMNG ++ LKV++ R
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 578
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 35.5 bits (78), Expect = 0.011
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 34 DLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 204
DL+ F+K+G ++ V + N GF F+ E Q+AE A ++G+ + G ++V +
Sbjct: 168 DLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCA 227
Query: 205 RKR 213
R
Sbjct: 228 TAR 230
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 35.5 bits (78), Expect = 0.011
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 34 DLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEIS 204
DL+ F+K+G ++ V + N GF F+ E Q+AE A ++G+ + G ++V +
Sbjct: 168 DLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCA 227
Query: 205 RKR 213
R
Sbjct: 228 TAR 230
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 35.5 bits (78), Expect = 0.011
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 103 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 213
F F+ +EN Q A +A SAMNG ++ LKV++ R
Sbjct: 471 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 507
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 35.5 bits (78), Expect = 0.011
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 103 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 213
F F+ +EN Q A +A SAMNG ++ LKV++ R
Sbjct: 542 FGFVSYENAQSATNAISAMNGFQIGSKRLKVQLKVDR 578
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 35.5 bits (78), Expect = 0.011
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 165
VGGL KE L++ F ++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 255 VGGLGSWCDKEILQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 308
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 35.5 bits (78), Expect = 0.011
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 165
VGGL KE L++ F ++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 255 VGGLGSWCDKEILQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 308
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 35.5 bits (78), Expect = 0.011
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNG 165
VGGL KE L++ F ++G + ++ P +A++ +EN +++AC ++ G
Sbjct: 232 VGGLGSWCDKEILQKAFGEFGFVENIDYDHGQP-YAYVVYENTHTSQEACRSLRG 285
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 35.1 bits (77), Expect = 0.014
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +1
Query: 28 KEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNGTEMLGATLK 192
+E++ F G +N+V + + P GFAF+EF A+ A +NG G L+
Sbjct: 19 EEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLR 78
Query: 193 VEISRK 210
V + K
Sbjct: 79 VNYANK 84
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 34.3 bits (75), Expect = 0.025
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 100 GFAFIEFENLQEAEDACSAMNGTEMLGATLKV 195
G+AF+ N EA +A ++NGT + G TL+V
Sbjct: 415 GYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQV 446
Score = 29.9 bits (64), Expect = 0.54
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Frame = +1
Query: 10 LVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDACSAMNGTEM 174
L +G+ +E++ F G++ S + + G+ F+ + ++A A S+ NG +
Sbjct: 49 LPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRL 108
Query: 175 LGATLKVEISR 207
T+KV +R
Sbjct: 109 QNKTIKVSYAR 119
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 33.9 bits (74), Expect = 0.033
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +1
Query: 16 EGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNGTEMLGA 183
E + +E L F K+G++ S V + P GF F+ F + A A +N + + G
Sbjct: 247 EHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGT 306
Query: 184 TLKVEISR 207
K+ + R
Sbjct: 307 DCKLSVCR 314
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 33.9 bits (74), Expect = 0.033
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +1
Query: 16 EGIKKEDLEREFDKYGKLNSVWVALN----PPGFAFIEFENLQEAEDACSAMNGTEMLGA 183
E + +E L F K+G++ S V + P GF F+ F + A A +N + + G
Sbjct: 247 EHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGT 306
Query: 184 TLKVEISR 207
K+ + R
Sbjct: 307 DCKLSVCR 314
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 33.9 bits (74), Expect = 0.033
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNP------PGFAFIEFENLQEAEDACSAMN 162
+ L + K LE F YG + +V + + G+ ++E++NL++AE + M+
Sbjct: 137 IKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMD 196
Query: 163 GTEMLGATLKVEIS 204
G ++ G + VE++
Sbjct: 197 GGQIDGMAVHVEMT 210
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 33.9 bits (74), Expect = 0.033
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNG 165
VGG+ + EDL F +YG++ V + GFAF+EF + + A +A
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQ 92
Query: 166 TEMLGATLKVEISRKRD 216
T + G +++V+ ++ R+
Sbjct: 93 T-IKGKSVEVKPAKSRE 108
Score = 32.3 bits (70), Expect = 0.10
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSV-W----VALNPPGFAFIEFENLQEAEDACSAMNG 165
VGGL ++DL F+++GK++ + W FAFI FE + A+ A S
Sbjct: 114 VGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQ 173
Query: 166 T 168
T
Sbjct: 174 T 174
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 33.9 bits (74), Expect = 0.033
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNG 165
VGG+ + EDL F +YG++ V + GFAF+EF + + A +A
Sbjct: 33 VGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNGRSRGFAFVEFTTGEGCKLALAAREQ 92
Query: 166 TEMLGATLKVEISRKRD 216
T + G +++V+ ++ R+
Sbjct: 93 T-IKGKSVEVKPAKSRE 108
Score = 32.3 bits (70), Expect = 0.10
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSV-W----VALNPPGFAFIEFENLQEAEDACSAMNG 165
VGGL ++DL F+++GK++ + W FAFI FE + A+ A S
Sbjct: 114 VGGLPSDYSEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQ 173
Query: 166 T 168
T
Sbjct: 174 T 174
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 33.5 bits (73), Expect = 0.043
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 103 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRD 216
F F+ ++N+ ++ A +AMNG ++ LKV++ R R+
Sbjct: 472 FGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKRPRN 509
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 33.5 bits (73), Expect = 0.043
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 100 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRD 216
GFAFI F + + ++ A AMNG + + V + KRD
Sbjct: 143 GFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRD 181
Score = 31.1 bits (67), Expect = 0.23
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSV-----WVALNPPGFAFIEFENLQEAEDACSAMNG 165
VGGL E + + L + G + SV V N GF F+EF ++A+ A +N
Sbjct: 17 VGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNM 76
Query: 166 TEMLGATLKV 195
++ G +KV
Sbjct: 77 IKLYGKPIKV 86
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 33.5 bits (73), Expect = 0.043
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 100 GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRD 216
GFAFI F + + ++ A AMNG + + V + KRD
Sbjct: 153 GFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRD 191
Score = 31.1 bits (67), Expect = 0.23
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSV-----WVALNPPGFAFIEFENLQEAEDACSAMNG 165
VGGL E + + L + G + SV V N GF F+EF ++A+ A +N
Sbjct: 27 VGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNM 86
Query: 166 TEMLGATLKV 195
++ G +KV
Sbjct: 87 IKLYGKPIKV 96
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 33.5 bits (73), Expect = 0.043
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 103 FAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKRD 216
F F+ ++N+ ++ A +AMNG ++ LKV++ R R+
Sbjct: 472 FGFVSYDNIHSSQAAITAMNGFQIGMKRLKVQLKRPRN 509
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 33.5 bits (73), Expect = 0.043
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +1
Query: 22 IKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEI 201
I ++D+ F +GK+ +V GF F++F A+++C ++NG L V +
Sbjct: 95 ITRDDIIELFRPFGKIIAVNYFAQQ-GFGFVQFNEAGSADESCRSLNGMSWKACCLDVHL 153
Query: 202 S 204
+
Sbjct: 154 A 154
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 33.5 bits (73), Expect = 0.043
Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +1
Query: 49 FDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 210
F+ +G++ + + ++ GFA I F N +A+ +C +N E+ G +++ I ++
Sbjct: 147 FESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSIKQE 204
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 33.5 bits (73), Expect = 0.043
Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +1
Query: 49 FDKYGKLNSVWVALNPP----GFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 210
F+ +G++ + + ++ GFA I F N +A+ +C +N E+ G +++ I ++
Sbjct: 292 FESFGRIEKIDLEVDSNRENRGFATITFRNADDAQKSCEQLNNFELAGRCIRLSIKQE 349
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 33.1 bits (72), Expect = 0.057
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +1
Query: 25 KKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNGTEMLGATL 189
K++DL+ F KYG+++ V V ++ GFA +EF + A A SA++G G +
Sbjct: 291 KEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSALDGYVFKGRMM 350
Query: 190 KV 195
+
Sbjct: 351 HI 352
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 33.1 bits (72), Expect = 0.057
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNG 165
VG + G E++E+ F G ++ V + + P GFA++EF + ++A AM
Sbjct: 82 VGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNAL-AMTD 140
Query: 166 TEMLGATLKVEISR 207
+ + G +KV+ R
Sbjct: 141 SLLRGRQIKVDPKR 154
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 33.1 bits (72), Expect = 0.057
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLG 180
VG + + DL F YG + V + +AF+ +E + A A MNG EM G
Sbjct: 241 VGNISQQTTDADLRDLFSTYGDIAEVRI-FKTQRYAFVRYEKKECATKAIMEMNGKEMAG 299
Query: 181 ATLKVEISR 207
++ R
Sbjct: 300 NQVRCSWGR 308
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 33.1 bits (72), Expect = 0.057
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 10 LVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGA-T 186
L + E LE F+++ L + + N PG AF+EF+ A A + +N ++ T
Sbjct: 139 LPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFKISAEHT 198
Query: 187 LKVEISRK 210
++V+ ++K
Sbjct: 199 MRVDYAKK 206
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 33.1 bits (72), Expect = 0.057
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDACSAMNGTE 171
V + +++DL F YG++ SV + N GF F+ ++++ E A +A++ +
Sbjct: 55 VSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAALHESH 114
Query: 172 MLGATLKV 195
+ G ++V
Sbjct: 115 VQGRIIEV 122
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 33.1 bits (72), Expect = 0.057
Identities = 15/70 (21%), Positives = 35/70 (50%)
Frame = +1
Query: 7 GLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGAT 186
G + + ++++ + F +G++ V + G+AF++F+N A A MN ++ G
Sbjct: 133 GNIASLTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQL 191
Query: 187 LKVEISRKRD 216
++ + D
Sbjct: 192 VRCSWGKTGD 201
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACSAMNG 165
VG L + + L F +G ++ V G+ F+ + +EAE A MNG
Sbjct: 26 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNG 85
Query: 166 TEMLGATLKVEISRKR 213
+ T++ + ++
Sbjct: 86 QWLGRRTIRTNWATRK 101
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 33.1 bits (72), Expect = 0.057
Identities = 15/70 (21%), Positives = 35/70 (50%)
Frame = +1
Query: 7 GLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGAT 186
G + + ++++ + F +G++ V + G+AF++F+N A A MN ++ G
Sbjct: 143 GNIASLTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQL 201
Query: 187 LKVEISRKRD 216
++ + D
Sbjct: 202 VRCSWGKTGD 211
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACSAMNG 165
VG L + + L F +G ++ V G+ F+ + +EAE A MNG
Sbjct: 36 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNG 95
Query: 166 TEMLGATLKVEISRKR 213
+ T++ + ++
Sbjct: 96 QWLGRRTIRTNWATRK 111
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 33.1 bits (72), Expect = 0.057
Identities = 15/70 (21%), Positives = 35/70 (50%)
Frame = +1
Query: 7 GLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGAT 186
G + + ++++ + F +G++ V + G+AF++F+N A A MN ++ G
Sbjct: 246 GNIASLTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQL 304
Query: 187 LKVEISRKRD 216
++ + D
Sbjct: 305 VRCSWGKTGD 314
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACSAMNG 165
VG L + + L F +G ++ V G+ F+ + +EAE A MNG
Sbjct: 139 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNG 198
Query: 166 TEMLGATLKVEISRKR 213
+ T++ + ++
Sbjct: 199 QWLGRRTIRTNWATRK 214
Score = 27.9 bits (59), Expect = 2.2
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVAL---NPPGFAFIEFENLQEAEDACSAMNGTE 171
VG L + ++ + F++ G + V N P +AF+EF + +A A MN
Sbjct: 50 VGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP-YAFVEFSDHGQASQALQTMNKRL 108
Query: 172 MLGATLKV 195
+L +KV
Sbjct: 109 LLDREMKV 116
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 33.1 bits (72), Expect = 0.057
Identities = 15/70 (21%), Positives = 35/70 (50%)
Frame = +1
Query: 7 GLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGAT 186
G + + ++++ + F +G++ V + G+AF++F+N A A MN ++ G
Sbjct: 214 GNIASLTEDEIRQGFASFGRITEVRI-FKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQL 272
Query: 187 LKVEISRKRD 216
++ + D
Sbjct: 273 VRCSWGKTGD 282
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWV-----ALNPPGFAFIEFENLQEAEDACSAMNG 165
VG L + + L F +G ++ V G+ F+ + +EAE A MNG
Sbjct: 107 VGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNG 166
Query: 166 TEMLGATLKVEISRKR 213
+ T++ + ++
Sbjct: 167 QWLGRRTIRTNWATRK 182
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 33.1 bits (72), Expect = 0.057
Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALN---PPGFAFIEFENLQEAEDACSAMNGTE 171
V + +++DL F YG++ SV + N GF F+ ++++ E A +A++ +
Sbjct: 55 VSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAALHESH 114
Query: 172 MLGATLKV 195
+ G ++V
Sbjct: 115 VQGRIIEV 122
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 32.7 bits (71), Expect = 0.076
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = +1
Query: 49 FDKYGKLNSVWVALNP---PGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRKR 213
F+K G + V + N GF F+ +N +A+ A + NGT + G ++V ++ +R
Sbjct: 2 FEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 59
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +1
Query: 31 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 195
EDLE F ++GK+N+ + + +AFIEF+N + E A M+ + + V
Sbjct: 255 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHV 314
Query: 196 EISR 207
+ S+
Sbjct: 315 DFSQ 318
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +1
Query: 31 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 195
EDLE F ++GK+N+ + + +AFIEF+N + E A M+ + + V
Sbjct: 255 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHV 314
Query: 196 EISR 207
+ S+
Sbjct: 315 DFSQ 318
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = +1
Query: 31 EDLEREFDKYGKLNSVWVALNPPG-----FAFIEFENLQEAEDACSAMNGTEMLGATLKV 195
EDLE F ++GK+N+ + + +AFIEF+N + E A M+ + + V
Sbjct: 186 EDLEIIFSRFGKINNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHV 245
Query: 196 EISR 207
+ S+
Sbjct: 246 DFSQ 249
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 30.7 bits (66), Expect = 0.31
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDAC 150
+GGL ED+++ F+ YGK+ + + GF F+ F++ + A+ C
Sbjct: 138 IGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVC 192
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 30.7 bits (66), Expect = 0.31
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPP-----GFAFIEFENLQEAEDAC 150
+GGL ED+++ F+ YGK+ + + GF F+ F++ + A+ C
Sbjct: 138 IGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADKVC 192
>U28928-13|AAL16321.1| 339|Caenorhabditis elegans Hypothetical
protein C44B7.2b protein.
Length = 339
Score = 30.3 bits (65), Expect = 0.41
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +1
Query: 106 AFIEFENLQEAEDACSAMNGTEMLG--ATLKVEISR 207
A +EFE+++ A+ A AMNG ++ TLKVE ++
Sbjct: 163 ALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK 198
>U28928-12|AAL16320.2| 597|Caenorhabditis elegans Hypothetical
protein C44B7.2a protein.
Length = 597
Score = 30.3 bits (65), Expect = 0.41
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +1
Query: 106 AFIEFENLQEAEDACSAMNGTEMLG--ATLKVEISR 207
A +EFE+++ A+ A AMNG ++ TLKVE ++
Sbjct: 163 ALVEFESMEVAKAAKHAMNGADIYSGCCTLKVEFAK 198
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 29.5 bits (63), Expect = 0.71
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 16 EGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMN 162
EG + E ++ F ++ L V N FAFIE+E+ +E A A++
Sbjct: 152 EGTEPEQIQTIFSQFPGLREVRWMPNTKDFAFIEYESEDLSEPARQALD 200
>U39853-2|AAK39225.1| 771|Caenorhabditis elegans Kinase suppressor
of activatedras protein 1 protein.
Length = 771
Score = 29.5 bits (63), Expect = 0.71
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -1
Query: 179 PNISVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPST 12
P P A+ +SS++ + S A P G S + + PY RS FL P T
Sbjct: 307 PAFQFPDTAIDSSSSTNSSAPSTPALPAGISGNVSSLTAPY----RSERKFLFPDT 358
>U38820-1|AAA92436.1| 771|Caenorhabditis elegans KSR-1 protein.
Length = 771
Score = 29.5 bits (63), Expect = 0.71
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -1
Query: 179 PNISVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPST 12
P P A+ +SS++ + S A P G S + + PY RS FL P T
Sbjct: 307 PAFQFPDTAIDSSSSTNSSAPSTPALPAGISGNVSSLTAPY----RSERKFLFPDT 358
>S80647-1|AAB35769.1| 771|Caenorhabditis elegans KSR-1 protein.
Length = 771
Score = 29.5 bits (63), Expect = 0.71
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -1
Query: 179 PNISVPFIALHASSASCKFSNSMKAKPGGFSATQTEFSFPYLSNSRSRSSFLIPST 12
P P A+ +SS++ + S A P G S + + PY RS FL P T
Sbjct: 307 PAFQFPDTAIDSSSSTNSSAPSTPALPAGISGNVSSLTAPY----RSERKFLFPDT 358
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 22 IKKEDLEREFDKYGKLNSVWVA--LNPPGFAFIEFENLQEAEDACSAMNG 165
I E++ F K+G + + V G AF+ +E++ +A+ AC ++G
Sbjct: 30 ITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHLSG 79
>AF038618-2|AAB92072.1| 487|Caenorhabditis elegans Hypothetical
protein F42G8.8 protein.
Length = 487
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +1
Query: 94 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVE 198
P GF F + L A MN T+ GATLKVE
Sbjct: 277 PEGFKFFADQKLLTIFSAPRYMNETDNHGATLKVE 311
>Z81529-5|CAB04296.1| 288|Caenorhabditis elegans Hypothetical
protein F35E8.7 protein.
Length = 288
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 209 SGTGPAEVGSEVGAAVTSGVVVHSEVREEAGLTTHTVAAAAGRT 340
S PA + V AV + + V A +TT TVAAAA T
Sbjct: 199 STAAPAAPTTTVAPAVVTTTAAPAAVTTTAAVTTTTVAAAAATT 242
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 27.9 bits (59), Expect = 2.2
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALN-----PPGFAFIEFENLQEAEDACSAMNG 165
VG L K++ + F + G + V + L+ P GF F+E+ ++AE A ++
Sbjct: 41 VGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELALQNISN 100
Query: 166 TEM 174
T M
Sbjct: 101 TRM 103
>Z70308-9|CAA94346.2| 402|Caenorhabditis elegans Hypothetical
protein F49E11.7 protein.
Length = 402
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +1
Query: 94 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 210
P GF F + L A MN T+ GATL+VE K
Sbjct: 296 PEGFKFFADQKLLTIFSAPRYMNETDNHGATLRVETDGK 334
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVW 81
VGGL +K+ D+ F +YG+L W
Sbjct: 92 VGGLPSCVKESDILNFFSRYGRLQVDW 118
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 27.1 bits (57), Expect = 3.8
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Frame = +1
Query: 25 KKEDLEREFDKYGKLNSVWVALNPP--------GFAFIEFENLQEAEDACSAMNGTEMLG 180
KKEDL+ GK V + L P GF FI+F +AE N ++LG
Sbjct: 107 KKEDLQNLCSNIGKF--VEIVLPPSRKDPKTCAGFGFIQFVEKADAEKGREFFNTNKVLG 164
Query: 181 ATLKVEISRKRD 216
++ + + +D
Sbjct: 165 RSVAADWALDKD 176
>Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical
protein T07F10.3 protein.
Length = 371
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYG----KLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGT 168
+G + +E L + F + G K+ V+V G+ FIEF EA +NG
Sbjct: 72 IGDVPTDWTEETLSQVFTECGHAPYKVKRVYVKDELKGYCFIEFITFDEARQTLYDLNGN 131
Query: 169 EMLG 180
+ G
Sbjct: 132 RIPG 135
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Frame = +1
Query: 19 GIKKEDLEREFDKYGKLNSVWVALNP-----PGFAFIEFENLQEAEDACSAMNG 165
G +++L F ++G + + VA N G+A++ F+N AE A +MNG
Sbjct: 42 GFFEKELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEIAAESMNG 95
>Z73103-9|CAJ43433.1| 719|Caenorhabditis elegans Hypothetical
protein C08F8.2b protein.
Length = 719
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +1
Query: 94 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 207
PPG + + +D C+ + T+ +G L + I R
Sbjct: 387 PPGTKLAQAAKFNDPDDECNVLVATDAIGMGLNLNIRR 424
>Z73103-8|CAA97429.1| 721|Caenorhabditis elegans Hypothetical
protein C08F8.2a protein.
Length = 721
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +1
Query: 94 PPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISR 207
PPG + + +D C+ + T+ +G L + I R
Sbjct: 389 PPGTKLAQAAKFNDPDDECNVLVATDAIGMGLNLNIRR 426
>Z46793-2|CAA86771.1| 322|Caenorhabditis elegans Hypothetical
protein C56G7.3 protein.
Length = 322
Score = 26.6 bits (56), Expect = 5.0
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -1
Query: 161 FIALHASSASCKFSNSMKAKPGGFSATQTEFS 66
F ALHAS A C+F + K++ + TQT FS
Sbjct: 263 FSALHAS-AMCRFCSIYKSQKCTLANTQTIFS 293
>Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical
protein C09D8.1b protein.
Length = 1467
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +1
Query: 52 DKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 210
++YG ++ W+ L P ++ + NL E + L +L V S+K
Sbjct: 581 EEYGPISHYWIILVPANYSTEDVVNLDPIELEKATAEKRAQLARSLSVSPSKK 633
>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +1
Query: 52 DKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 210
++YG ++ W+ L P ++ + NL E + L +L V S+K
Sbjct: 1294 EEYGPISHYWIILVPANYSTEDVVNLDPIELEKATAEKRAQLARSLSVSPSKK 1346
>Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical
protein C09D8.1c protein.
Length = 1216
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +1
Query: 52 DKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 210
++YG ++ W+ L P ++ + NL E + L +L V S+K
Sbjct: 330 EEYGPISHYWIILVPANYSTEDVVNLDPIELEKATAEKRAQLARSLSVSPSKK 382
>Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical
protein C09D8.1b protein.
Length = 1467
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +1
Query: 52 DKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 210
++YG ++ W+ L P ++ + NL E + L +L V S+K
Sbjct: 581 EEYGPISHYWIILVPANYSTEDVVNLDPIELEKATAEKRAQLARSLSVSPSKK 633
>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +1
Query: 52 DKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 210
++YG ++ W+ L P ++ + NL E + L +L V S+K
Sbjct: 1294 EEYGPISHYWIILVPANYSTEDVVNLDPIELEKATAEKRAQLARSLSVSPSKK 1346
>AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.
Length = 1487
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +1
Query: 52 DKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 210
++YG ++ W+ L P ++ + NL E + L +L V S+K
Sbjct: 601 EEYGPISHYWIILVPANYSTEDVVNLDPIELEKATAEKRAQLARSLSVSPSKK 653
>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
Length = 2200
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +1
Query: 52 DKYGKLNSVWVALNPPGFAFIEFENLQEAEDACSAMNGTEMLGATLKVEISRK 210
++YG ++ W+ L P ++ + NL E + L +L V S+K
Sbjct: 1314 EEYGPISHYWIILVPANYSTEDVVNLDPIELEKATAEKRAQLARSLSVSPSKK 1366
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMNGT 168
+GGL + ++ ++ +G L + + + N G+AF E+ + + A + +NG
Sbjct: 295 IGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGM 354
Query: 169 EMLGATLKVEIS 204
++ L V+++
Sbjct: 355 QLGDKQLVVQLA 366
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMNGT 168
+GGL + ++ ++ +G L + + + N G+AF E+ + + A + +NG
Sbjct: 295 IGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGM 354
Query: 169 EMLGATLKVEIS 204
++ L V+++
Sbjct: 355 QLGDKQLVVQLA 366
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMNGT 168
+GGL + ++ ++ +G L + + + N G+AF E+ + + A + +NG
Sbjct: 270 IGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGM 329
Query: 169 EMLGATLKVEIS 204
++ L V+++
Sbjct: 330 QLGDKQLVVQLA 341
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVAL----NPPGFAFIEFENLQEAEDACSAMNGT 168
+GGL + ++ ++ +G L + + + N G+AF E+ + + A + +NG
Sbjct: 273 IGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGLNGM 332
Query: 169 EMLGATLKVEIS 204
++ L V+++
Sbjct: 333 QLGDKQLVVQLA 344
>AC006744-3|AAF60507.1| 126|Caenorhabditis elegans Hypothetical
protein Y38C9B.3 protein.
Length = 126
Score = 25.8 bits (54), Expect = 8.7
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Frame = +1
Query: 1 VGGLVEGIKKEDLEREFDKYGKLNSVWVALNPPGFAFIEFENLQEAED----ACSAMNGT 168
+GG + + L+ +F+KY N PG I F +L+ A+ A MN +
Sbjct: 12 LGGGISNFLRNYLKEKFEKYKVTIPAITVENNPGLLDINFPSLKFAQSIALRAIIFMNNS 71
Query: 169 EMLGA 183
+ L A
Sbjct: 72 QALSA 76
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.314 0.135 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,311,274
Number of Sequences: 27780
Number of extensions: 113621
Number of successful extensions: 371
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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