Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1926
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    27   2.9  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    25   8.7  
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    25   8.7  

>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = +3

Query: 231 ALNGIL*HGDIEQSIEKIKQSTDEKFNKIFNILYTVSRDLNL 356
           A+NGIL +GD    +  ++ S+ E   ++F++   ++R +N+
Sbjct: 54  AVNGILLNGDPSMFMALLRDSSPEVTLEVFSLKGQITRKVNI 95


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +3

Query: 228 VALNGIL*HGDIEQSIEKIKQSTDEK 305
           +A++G++  GD++  +EK  QS +E+
Sbjct: 368 LAVHGVVDLGDLQMKVEKCVQSCEER 393


>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
 Frame = +3

Query: 99  EPLNKAVGLCERGQPHAALXRL------CLATMTDGLSIAAMDG-DKVLGVALNGIL*HG 257
           +PL KA+GL ++   H  L  L      C A    G     + G D+ +  +L+G +   
Sbjct: 557 QPL-KAIGLLKKICNHPDLLNLTEDLEGCEALFPPGFIPRELRGRDRNIDSSLSGKMLV- 614

Query: 258 DIEQSIEKIKQSTDEKFNKIFNILYTVSRDL 350
            +E+ + +IKQ TD+K   I N  YT + DL
Sbjct: 615 -LERMLYQIKQETDDKIVLISN--YTSTLDL 642


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,448
Number of Sequences: 5004
Number of extensions: 53558
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)