Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1926
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0341 + 3011238-3011246,3011824-3012192,3012412-3012505,301...    33   0.24 
06_03_0217 - 18158217-18158705                                         31   1.3  
02_02_0349 + 9237537-9238334                                           29   3.0  
10_08_0790 + 20586222-20586310,20586718-20586783,20588149-205883...    29   5.2  
10_08_0478 + 18192636-18192784,18192991-18193052,18193381-181934...    28   6.9  
07_03_1636 + 28290642-28291574                                         28   9.1  
03_05_0101 - 20803546-20803800,20803907-20804700,20804788-208050...    28   9.1  

>08_01_0341 +
           3011238-3011246,3011824-3012192,3012412-3012505,
           3012594-3012631,3012862-3013008,3013912-3014011,
           3014615-3015042,3015234-3015389
          Length = 446

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +3

Query: 135 GQPHAALXRLCLATMTDGLSIAAMDGDKVLGVALNGIL*HGDIEQSIE 278
           G  HA    + L+T  DG  I  + GD ++   LNG+L   D+E++I+
Sbjct: 141 GHAHALASTVDLSTCPDG--IICVGGDGIVNEVLNGLLGRDDLEEAIQ 186


>06_03_0217 - 18158217-18158705
          Length = 162

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 265 SMSPCHKMPFRATPNTLSPSIAAIERPSVIVARQRRXKAACGWPLSQSPTALL 107
           SM P    PF  +P  LSPS   +  P  ++ R RR   A    +  +P+ LL
Sbjct: 37  SMDPRSPRPFPLSPAALSPSRCYLNVPRALLLRFRRSPLALTVGIGIAPSHLL 89


>02_02_0349 + 9237537-9238334
          Length = 265

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
 Frame = +2

Query: 23  GGLRSRDA-VDEGRRDPX------PSGQLLRRRAPQ*GGGALREGPTTRGLXTSLPRNYD 181
           GGLR+  A + EGR++        P G   R RA +  GGA     TT  +  S P N D
Sbjct: 44  GGLRTGGAALAEGRKEKRLGEKAAPHGGRKRERAKRRRGGA-----TTFSVFQSYPSNMD 98

Query: 182 RWSFYC 199
            W + C
Sbjct: 99  GWIYLC 104


>10_08_0790 +
           20586222-20586310,20586718-20586783,20588149-20588350,
           20588491-20588548,20588850-20589052,20589147-20589204,
           20589473-20589579
          Length = 260

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 264 EQSIEKIKQSTDEKFNKIFNILYTVSRDLNLFNTFEVDLIME 389
           E++ E++KQ  D++FN I +   T+ RDL       VD  +E
Sbjct: 85  EETREQLKQFWDDEFNAISSGETTIERDLKWMRKEVVDYELE 126


>10_08_0478 +
           18192636-18192784,18192991-18193052,18193381-18193437,
           18193771-18193805,18193940-18194043,18194238-18194313,
           18194469-18194527,18194879-18194962,18195065-18195129,
           18195241-18195323,18195670-18195760,18195847-18196157
          Length = 391

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 128 REGPTTRGLXTSLPRNYDRWSFYCCDGR*QGVRR 229
           R      GL T+ P  ++ W+ + CDG  + V R
Sbjct: 35  RRSMLANGLATAPPMGWNSWNHFACDGNGEDVIR 68


>07_03_1636 + 28290642-28291574
          Length = 310

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
 Frame = -3

Query: 256 PCHKMPFRATPNTLSPSIAAIERPSVIVARQR---RXKAACGWPLSQSPTALLRGSSAKK 86
           P  K P  ATP+     +AA+  P+V  A +       A   W +  +PTA    S    
Sbjct: 202 PLAKPPAPATPSRAGGHVAALAPPAVAKADRHVSTPSPAKADWQMVGTPTATKGASKHGS 261

Query: 85  LSRRXWITASFIDG 44
           L     + A  + G
Sbjct: 262 LEFERGLNAGLVGG 275


>03_05_0101 -
           20803546-20803800,20803907-20804700,20804788-20805042,
           20805143-20805263,20805716-20805768,20805979-20806239,
           20806734-20806784,20806900-20807148,20807257-20807479,
           20807737-20807910
          Length = 811

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
 Frame = +3

Query: 288 QSTDEKFNKIFNILYTVSRDLNLFNTFEVDLIMEC---RIISVHENAR--GRGLAKELMK 452
           +  D+    +   L    RDLNL+NT E  L M C   RI S   + R  G G+  E M 
Sbjct: 645 EMADDFVTTLVEYLQYYIRDLNLYNTVE-PLKMSCPSIRIDSFSWDRRPSGHGIYAEEML 703

Query: 453 RSIDLARDNEFKLFKVDATGAFSQRICRSLSLEXLKSVRYDE 578
             I     +E  +  V  +   +Q     +SLE +  +  D+
Sbjct: 704 TPIQ--SFSELTMHPVGMSSRLAQFQTTKMSLEEMLKIEEDQ 743


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,103,956
Number of Sequences: 37544
Number of extensions: 389269
Number of successful extensions: 1080
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)