Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1926
         (750 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL355802-16|CAI42632.1|  200|Homo sapiens RP3-337H4.4 protein.         32   2.5  

>AL355802-16|CAI42632.1|  200|Homo sapiens RP3-337H4.4 protein.
          Length = 200

 Score = 31.9 bits (69), Expect = 2.5
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = +3

Query: 303 KFNKIFNILYTVSRDLNLFNTFEVDLIME---CRIISVHENARGRGLAKELMKRSIDLAR 473
           KF+ +    Y +  D+ L    E +   E   C    V E    +G+  E +K+ + LAR
Sbjct: 96  KFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEVQGMRNEKLKKVVRLAR 155

Query: 474 DNEFKLFKVDATGAFSQRICRSLSLEXL 557
             +  +F V++TG     +  S +++ L
Sbjct: 156 VRDHYIFSVESTGVLPPDVLVSEAIKVL 183


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,935,565
Number of Sequences: 237096
Number of extensions: 2044720
Number of successful extensions: 5615
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5614
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)