Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1924
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82287-2|CAB05312.1|  502|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    27   9.8  
U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonin...    27   9.8  
U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase ...    27   9.8  

>Z82287-2|CAB05312.1|  502|Caenorhabditis elegans Hypothetical
           protein ZK550.2 protein.
          Length = 502

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -2

Query: 588 LPXASRSVVAGTDSDSWQCCVPASRPQAIATVYAFIIYFTI 466
           LP  S + + G   DS+  C   +R      ++AF+ +F I
Sbjct: 361 LPPGSNTTIVGGCLDSYSWCNTTTRVPMALYIFAFVFFFGI 401


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 563  SPALTVTVGSAACPXPAPKRSRLCMLSLSTLRFKIRHQNFNYXPNSK 423
            +P+LTV +  AA   P   +  LC L  +TL+    +    Y P+ K
Sbjct: 1126 TPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPK 1172


>U32275-1|AAA75370.1|  982|Caenorhabditis elegans serine-threonine
           kinase protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 52  STGYVGGARAAPLGSRRHPIIPVQLFSRT 138
           S+GY  G+ +    +RR P IP Q+ S T
Sbjct: 398 SSGYGNGSSSTTSSARRRPPIPSQMLSST 426


>U29614-6|AAA68809.2|  378|Caenorhabditis elegans Hypothetical
           protein F18E9.3 protein.
          Length = 378

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 451 KISTTYLTVSGSTLKLRHSTPTSHTTCAR 365
           K  TT  T +  T K+R STP +H+T  R
Sbjct: 129 KKKTTTTTHAPLTTKMRESTPATHSTTER 157


>U11280-5|AAA19437.1|  982|Caenorhabditis elegans Protein kinase
           protein 18, isoforma protein.
          Length = 982

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 52  STGYVGGARAAPLGSRRHPIIPVQLFSRT 138
           S+GY  G+ +    +RR P IP Q+ S T
Sbjct: 398 SSGYGNGSSSTTSSARRRPPIPSQMLSST 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,313,235
Number of Sequences: 27780
Number of extensions: 275725
Number of successful extensions: 533
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)