Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1919
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    28   1.2  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    27   1.6  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    26   5.0  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.8  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   8.8  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   8.8  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.8  

>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 22  PKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVRSTATLP 144
           P P + A+  P   T +ALA    + NQ   PQV  T   P
Sbjct: 600 PTPRTAAQEDPAEETTDALASAEGENNQ--MPQVLETEAAP 638


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 7   QGPSEPKPTSPARGAPCRSTNEALAETWSQKNQKLSPQVR 126
           Q   EP P S A  +P + + EALAE  +       P  R
Sbjct: 60  QKKKEPSPASSASASPVKKSAEALAERSNSSMGTFDPPPR 99


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 325 LNHRPIVITCENKFSKSWL 269
           LN + +V+ CE  F K+WL
Sbjct: 161 LNFKKLVLECECAFQKTWL 179


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 495 FLIFDCVCVCVCLFHNYSNSHI 430
           FL F  +CVCV L   +S SH+
Sbjct: 155 FLFFFFLCVCVFLSFLFSLSHL 176


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 450 NYSNSHIFDYIKKXSYDI 397
           N  N ++FDYIK  ++D+
Sbjct: 217 NKVNQYVFDYIKDANFDV 234


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +3

Query: 318 WLSYCSSTTCNSMLDCRF*VYEYLTSQCHSXAF*CNRIY 434
           W+S      CNS  D ++    +  + CHS     + IY
Sbjct: 342 WISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNTCISSIY 380


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 498 VFLIFDCVCVCVCLFHNYSNSHIFDYIKKXSYDIERL 388
           +FL   CV     L +N SN+ +   IKK S+  ERL
Sbjct: 268 LFLSILCVGYYHHLLNNPSNTELQSLIKKYSFYSERL 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,250
Number of Sequences: 5004
Number of extensions: 33893
Number of successful extensions: 80
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)