Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1904
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    27   2.5  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    27   3.4  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    26   5.9  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    26   7.8  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    26   7.8  

>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 739 FQSVIVFIIYIVHPHSYYKNLPXNNL 662
           FQSV   +  + H  S YKNLP NN+
Sbjct: 46  FQSVPDDVPEVPHIESRYKNLPGNNI 71


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 596 NYHQKTATSHTDLRYSHDQNIIVLPSLLSLRIGSTY 489
           N+H+K     T  RY    NII  PSL S  + +T+
Sbjct: 98  NHHEKEILHRTCKRYRIPLNIIDNPSLCSFTLPATW 133


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 767 LMNPKFHSGISIGNCFYNIHCTS 699
           L+   +++G+SIG+C  N H T+
Sbjct: 457 LLTGSWYNGVSIGDCIMNGHSTA 479


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 349 DWEIVIARTVTRLDRDTLNED*LQKNSPFNFNHSDVPLSELN 474
           +WE+V    ++R   +T   D L++   FN++H+ + + ELN
Sbjct: 624 EWELV--EVISRRVLNTSEND-LKRKKKFNWHHTSLGVLELN 662


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 685 KNLPXNNLINQQTLVRTTNNELLFNELFC*IIIRK 581
           KNLP  +L N    +R   N + F +LF  I++ K
Sbjct: 14  KNLPPLSLYNFYIYIRDEENAIEFLDLFLDIMLHK 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,256,465
Number of Sequences: 5004
Number of extensions: 63993
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)