Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1904
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0504 - 19771191-19772134,19772210-19774892                       29   4.7  
08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758...    29   4.7  
04_04_0014 + 22158441-22158669,22158782-22158878,22159264-221594...    29   4.7  
01_06_0487 + 29733380-29733448,29733492-29734373,29734851-297348...    29   6.2  

>12_02_0504 - 19771191-19772134,19772210-19774892
          Length = 1208

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/24 (54%), Positives = 20/24 (83%), Gaps = 1/24 (4%)
 Frame = +3

Query: 117  NSSVVSVCDLTLIR-YSLFSCCNI 185
            +S ++S+ DLT +R ++LFSCCNI
Sbjct: 976  DSVLMSLQDLTSLRSFTLFSCCNI 999


>08_01_0783 +
           7585326-7585477,7586420-7586589,7586687-7586801,
           7586887-7587055,7587185-7587319,7587409-7587728,
           7587992-7588127,7588224-7588472,7588567-7588787,
           7588906-7589164,7589264-7589971,7590095-7590424
          Length = 987

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 184 MLQHENNEYLINVKSHTDTTEL 119
           ++++EN  +L+NVK+H DT  L
Sbjct: 260 LVENENQAFLLNVKNHLDTLSL 281


>04_04_0014 +
           22158441-22158669,22158782-22158878,22159264-22159461,
           22159907-22160141,22160383-22160710,22160798-22161068,
           22161169-22161424,22161508-22161964,22162096-22162286
          Length = 753

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = -1

Query: 742 EFQSVIVFIIYIVHPHSYYKNLPXNNLINQQTLVRTTNNELL 617
           EF  +++FI+Y+V+  +YY  +   +LI++   +  T +ELL
Sbjct: 138 EFIGIVLFIVYVVYSMTYYA-VESVSLISKFGQISLTYSELL 178


>01_06_0487 +
           29733380-29733448,29733492-29734373,29734851-29734884,
           29735177-29735346,29735446-29735784
          Length = 497

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 618 CLMNCFVKLSSENSHITYRLALLPRPKYYCITFTFVVKDRQHIRI 484
           C      +L+  N H+ +   ++P P Y C T T +  D  H+R+
Sbjct: 119 CRSGGLQELAVRNKHV-HECYVVPSPVYACATLTSLELDACHLRV 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,163,407
Number of Sequences: 37544
Number of extensions: 371965
Number of successful extensions: 655
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)