Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1904
         (850 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    25   3.8  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           24   6.7  
AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    24   6.7  

>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 608 IVLLNYHQKTATSHTDLRYSHDQNIIVLPSLLSL-RIGSTY 489
           I++LNYH + + +H    +     +I LP +L + R G  Y
Sbjct: 296 ILILNYHHRNSDTHEMSEWIRVVFLIWLPFILRMSRPGEPY 336


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 3   DRFPSLPHTKHRYVASFL*GCS 68
           +RFPS P  + ++  S L GCS
Sbjct: 707 NRFPSRPRRQQQHQPSALAGCS 728


>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 505 GSAAHTNHVDRLVH*AAHHYD*N*KGCSSAAN 410
           G+AA T H     H A HH+    +  SSA N
Sbjct: 715 GAAAATGHHHHQHHAAPHHHSLQQQHASSAFN 746


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 825,948
Number of Sequences: 2352
Number of extensions: 16031
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 90132318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)