Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1904
(850 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT007200-1|AAP35864.1| 835|Homo sapiens mutS homolog 5 (E. coli... 30 9.2
BC002498-1|AAH02498.1| 835|Homo sapiens mutS homolog 5 (E. coli... 30 9.2
BC001358-1|AAH01358.1| 835|Homo sapiens mutS homolog 5 (E. coli... 30 9.2
BA000025-15|BAB63375.1| 834|Homo sapiens MSH5 protein. 30 9.2
AL844216-18|CAM45780.1| 728|Homo sapiens mutS homolog 5 (E. col... 30 9.2
AL844216-17|CAM45778.1| 727|Homo sapiens mutS homolog 5 (E. col... 30 9.2
AL844216-16|CAM45777.1| 194|Homo sapiens mutS homolog 5 (E. col... 30 9.2
AL662899-39|CAI18424.1| 835|Homo sapiens mutS homolog 5 (E. col... 30 9.2
AL662899-37|CAI18423.1| 834|Homo sapiens mutS homolog 5 (E. col... 30 9.2
AL662899-36|CAI18422.1| 194|Homo sapiens mutS homolog 5 (E. col... 30 9.2
AL662834-3|CAI17724.1| 835|Homo sapiens mutS homolog 5 (E. coli... 30 9.2
AL662834-2|CAI17723.1| 834|Homo sapiens mutS homolog 5 (E. coli... 30 9.2
AL662834-1|CAI17722.1| 194|Homo sapiens mutS homolog 5 (E. coli... 30 9.2
AF134726-13|AAD21822.1| 834|Homo sapiens MutSH5 protein. 30 9.2
AF129756-1|AAD18072.1| 270|Homo sapiens MSH5 protein. 30 9.2
AF070079-1|AAC70067.1| 834|Homo sapiens MutS homolog protein. 30 9.2
AF070071-1|AAC70066.1| 834|Homo sapiens MutS homolog protein. 30 9.2
AF048991-1|AAC62534.1| 834|Homo sapiens MutS homolog 5 protein. 30 9.2
AF048986-1|AAC62533.1| 834|Homo sapiens MutS homolog 5 protein. 30 9.2
AF034759-1|AAB87632.1| 834|Homo sapiens MutS homolog protein. 30 9.2
>BT007200-1|AAP35864.1| 835|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 835
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
>BC002498-1|AAH02498.1| 835|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 835
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
>BC001358-1|AAH01358.1| 835|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 835
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
>BA000025-15|BAB63375.1| 834|Homo sapiens MSH5 protein.
Length = 834
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
>AL844216-18|CAM45780.1| 728|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 728
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
>AL844216-17|CAM45778.1| 727|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 727
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
>AL844216-16|CAM45777.1| 194|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 194
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
>AL662899-39|CAI18424.1| 835|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 835
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
>AL662899-37|CAI18423.1| 834|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 834
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
>AL662899-36|CAI18422.1| 194|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 194
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
>AL662834-3|CAI17724.1| 835|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 835
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
>AL662834-2|CAI17723.1| 834|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 834
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
>AL662834-1|CAI17722.1| 194|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 194
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
>AF134726-13|AAD21822.1| 834|Homo sapiens MutSH5 protein.
Length = 834
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
>AF129756-1|AAD18072.1| 270|Homo sapiens MSH5 protein.
Length = 270
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
>AF070079-1|AAC70067.1| 834|Homo sapiens MutS homolog protein.
Length = 834
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
>AF070071-1|AAC70066.1| 834|Homo sapiens MutS homolog protein.
Length = 834
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
>AF048991-1|AAC62534.1| 834|Homo sapiens MutS homolog 5 protein.
Length = 834
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
>AF048986-1|AAC62533.1| 834|Homo sapiens MutS homolog 5 protein.
Length = 834
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
>AF034759-1|AAB87632.1| 834|Homo sapiens MutS homolog protein.
Length = 834
Score = 30.3 bits (65), Expect = 9.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 2 GSFSLAPAYKTSLRCILFIGMFVPT*CLLRIRAV 103
G++S P T+ ILF+ +P CLL +RA+
Sbjct: 150 GNYSFIPDAMTATEKILFLSSIIPFDCLLTVRAL 183
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,472,330
Number of Sequences: 237096
Number of extensions: 2141874
Number of successful extensions: 3175
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3175
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10761200974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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