Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1904
         (850 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M38643-1|AAA28939.1|  549|Drosophila melanogaster protein ( D.me...    34   0.21 
M22874-1|AAA28674.1|  583|Drosophila melanogaster nucleic acid-b...    34   0.21 

>M38643-1|AAA28939.1|  549|Drosophila melanogaster protein (
           D.melanogaster mobileelement jockey gag-specific protein
           gene, complete cds.).
          Length = 549

 Score = 34.3 bits (75), Expect = 0.21
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -2

Query: 318 SALASLVCTIH*NVNSNATILLFNICHIMFTFANQTDLTALGTSVC 181
           SA++SL+ TI  N N++ T  + N+   M      TD T + TS+C
Sbjct: 34  SAVSSLMVTISSNTNASVTCTISNVQANMICTPTYTDCTTVTTSIC 79


>M22874-1|AAA28674.1|  583|Drosophila melanogaster nucleic
           acid-binding protiein protein.
          Length = 583

 Score = 34.3 bits (75), Expect = 0.21
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -2

Query: 318 SALASLVCTIH*NVNSNATILLFNICHIMFTFANQTDLTALGTSVC 181
           SA++SL+ TI  N N++ T  + N+   M      TD T + TS+C
Sbjct: 68  SAVSSLMVTISSNTNASVTCTISNVQANMICTPTYTDCTTVTTSIC 113


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,921,508
Number of Sequences: 53049
Number of extensions: 699440
Number of successful extensions: 1234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4065385896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)