Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1904
         (850 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z78200-3|CAB01580.1|  144|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>Z81585-4|CAB04687.1|  345|Caenorhabditis elegans Hypothetical
           protein T05E12.4 protein.
          Length = 345

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
 Frame = -2

Query: 771 KLNESKISLRN----FNR*LFL*YTLYIPTHTTKTYPQII*LTNKLSYERRTMNYCLMNC 604
           K+NE  +S+R     F   +F+ +T    T+  K  P I+   N  S +    +Y L++C
Sbjct: 135 KINEKTVSVRISIAVFIFVMFVDFTELAMTYRIKWLPSILFYNNSKS-KPEWQHYVLVDC 193

Query: 603 FVKLSSENSHITYRLALLPRPKYYCITFTFVVKDR 499
           F  ++S   HI+     +P   Y  +T   +++ R
Sbjct: 194 FSCVTSLQIHISICSRFVPSLIYPILTTILILQLR 228


>Z78200-3|CAB01580.1|  144|Caenorhabditis elegans Hypothetical
           protein T04H1.3 protein.
          Length = 144

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 260 IVALLLTF*WMVHTSDAKAETSNSLVAVSVTGKL**QEQSRGSIVIR 400
           I  + L+  +++H SDA      S  +V+VTGKL  + Q    ++++
Sbjct: 4   ITYIALSVFFLIHCSDALLNVIGSTQSVTVTGKLVCEGQPASGVLVK 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,054,691
Number of Sequences: 27780
Number of extensions: 363176
Number of successful extensions: 685
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)