Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1900
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    28   1.8  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   1.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.3  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    26   5.4  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   9.5  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   9.5  

>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +3

Query: 438 SPIKCSSGSSL-ETRSLKATLKLLSIISSRSTPKR*TLRNLCIPIFQRK---PANLPAXA 605
           +P K ++ + L E +SLK T K LS ISS S  K     N   P+F  K    AN+P   
Sbjct: 150 NPQKGNNNNLLKENKSLKTTAKDLSDISSSSMKK---ANNSSKPLFSGKLTFKANIPVPT 206

Query: 606 **PNTENIKTEKI 644
               TEN  T  +
Sbjct: 207 SEVVTENNVTRNV 219


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 7/125 (5%)
 Frame = +2

Query: 206 EYKLEGDVVKVKNVHIIDGVKKYIE---GTAKL-TDDANKAAKLTVTFKFGE--ISRDGS 367
           EY++EG  +++ N  IID +    E   G  KL      KA + T+T    E   + +  
Sbjct: 600 EYRMEGQFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKAGRTTITNITSEPLDTPEQV 659

Query: 368 VQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDNFIK-EHSKEID 544
             +L     N ++A     +   +SH VF+  L+ +    G+   +  N I    S+ + 
Sbjct: 660 TWLLDQASKNRSVAATNANEHSSRSHSVFMLHLNGSNSTTGETCRSTLNLIDLAGSERLS 719

Query: 545 SSKLV 559
           SS+ V
Sbjct: 720 SSQSV 724


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 479  KLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEE 580
            K+EGDAKT  DN +++  K  D  K    D++EE
Sbjct: 1306 KIEGDAKTGDDNEMEDLDKMEDLEK---PDYAEE 1336


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 633 TEKILEALRGIKLNSNHSIEISIGVGFYW*NLTVNS 740
           T ++L+A     L  NHS+ + IG    W N+T  +
Sbjct: 183 TYQLLQAYDYSYLYENHSVNLQIGGSDQWGNITAGT 218


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 530 SKEIDSSKLVHTDFSEEACKFTSXSVITEHXKH 628
           +KEI+SSK   TD   E   FT  +  + +  H
Sbjct: 96  AKEIESSKNQETDAKSEQAPFTEDASSSNYAHH 128


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +2

Query: 116 NFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKY 274
           N N    +GI  E+SK+ +   KN + SS + K     V+ +    I+G+K +
Sbjct: 376 NINEINEEGIMTEVSKYASLVNKNYEISSGKLKERQVAVRAR----IEGIKAH 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,577
Number of Sequences: 5004
Number of extensions: 57164
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)