Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1898
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 188 1e-48
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 62 1e-10
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 46 4e-06
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 35 0.014
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 30 0.40
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.2
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 27 3.8
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 26 5.0
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 6.6
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 6.6
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 8.7
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 25 8.7
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 25 8.7
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 188 bits (457), Expect = 1e-48
Identities = 94/129 (72%), Positives = 107/129 (82%), Gaps = 1/129 (0%)
Frame = +3
Query: 288 DNLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIP 464
D+LP ILNALEV+ + RLVLEVAQH+GENTVRTIAMDGTEGLVRG V+D+GSPI IP
Sbjct: 73 DSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIP 132
Query: 465 VGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 644
VG TLGRI+NVIGEP+DERGPI K + IHA+AP F + S EIL TGIKVVDLLAP
Sbjct: 133 VGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDLLAP 192
Query: 645 YAKGGKIGV 671
YA+GGKIG+
Sbjct: 193 YARGGKIGL 201
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/27 (66%), Positives = 20/27 (74%)
Frame = +2
Query: 668 GCLAGPGVGKTVLIMELINNVAQAXGG 748
G G GVGKTV I ELINN+A+A GG
Sbjct: 200 GLFGGAGVGKTVFIQELINNIAKAHGG 226
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 61.7 bits (143), Expect = 1e-10
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Frame = +3
Query: 354 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 530
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 531 IPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKG 656
I T + + +AP + + E + TG+K +D + P +G
Sbjct: 149 IKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRG 190
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 46.4 bits (105), Expect = 4e-06
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Frame = +3
Query: 345 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 521
VLEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID+
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDK 118
Query: 522 RGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGKIGV 671
+ + I+ +E++ TGI +D L A+G KI +
Sbjct: 119 GPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSIDGLNSIARGQKIPI 168
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 34.7 bits (76), Expect = 0.014
Identities = 28/111 (25%), Positives = 46/111 (41%)
Frame = -3
Query: 682 SXQTTPIFPPLA*GASRSTTFIPVTRISCCTDMSTNSGASAWIAAVLSVGMGPRSSIGSP 503
S + PI P +++ +P T SC T S +G S+ ++ ++ + P S+ +
Sbjct: 201 SSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTS 260
Query: 502 ITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCCATS 350
I + S T P +ST C T S+P T +P TS
Sbjct: 261 IPIPPTSTSSTDTN-SSPLPTTSTSC-TTSTSIPPTGNSTTPVTPTVPPTS 309
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 29.9 bits (64), Expect = 0.40
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -3
Query: 712 HNQYSFAHTRSXQTTPIFPPLA*GASRSTTFIPVTRISCCTDMSTNSGASAW 557
++ YSF HT+ +P++ P++ S + F VT I T + +G W
Sbjct: 458 NSDYSFNHTKYESYSPLYMPMSYSMSTALNFAAVTAI--FTHCALYNGKDIW 507
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 529 GPRSSIGSPITLMMRPRVSA-PTGIRMGEPESSTGCPRTKPSVPSM 395
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 26.6 bits (56), Expect = 3.8
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +3
Query: 336 PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPI 515
P + E +H G N+ EG+V+ L++ P+ IPV + N IGE
Sbjct: 10 PAIKNEPPKHYGPNSA------DREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGE-- 61
Query: 516 DERGPIPTDKTAA-IHAEAPEFVDMSVQQEILVTGIKVVDLLAPYA 650
+R P K A H + V+ ++ E + G KV + L P+A
Sbjct: 62 -QRCPFEHKKVVARYHRAGAKHVEDAI--EAALRGKKVWESL-PFA 103
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 315 GHLGSAASCLQTEHPLRHQ*RQLP 244
G GSA SCL H L H +Q P
Sbjct: 140 GFAGSAISCLVWAHQLLHPNKQFP 163
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 405 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 521
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 535 GMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMA 392
G G ++S+GS + R+ PT MG S+ G T P+ A
Sbjct: 487 GHGSQTSLGSIKRKSIMERMGRPTSPFMGSSFSNMGSRSTSPTKEGFA 534
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 469 PTGIRMGEPESSTGCPRTKPSVPSMAMV 386
P G +G PES+ KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 677 PNNPNLSTFGIRSEQIDDFYTSYENL 600
PN P++ FGI + Y +++NL
Sbjct: 302 PNQPSIQPFGILMMLVSTIYGNFKNL 327
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 196 TAAPVTSDAFSVALFTTVFVAKRPTLQT 113
T + VTS+A S A V +K+P L+T
Sbjct: 521 TESAVTSEALSAARLEAVKASKKPPLRT 548
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,267,175
Number of Sequences: 5004
Number of extensions: 70024
Number of successful extensions: 219
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -