Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1898
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 50 2e-06
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 41 0.001
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 31 0.98
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 31 1.3
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808... 30 1.7
11_06_0693 - 26334574-26336121 30 1.7
03_02_0325 - 7467862-7468054,7468668-7468752,7469124-7469290,747... 30 1.7
05_04_0098 + 17982196-17982355,17982761-17982978,17983232-179834... 30 2.3
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659... 29 3.0
06_01_1084 + 8883301-8883515,8883736-8884063,8884764-8885022,888... 29 3.9
06_02_0176 + 12637287-12637376,12638108-12638280,12638631-126387... 29 5.2
05_03_0637 - 16465433-16466242 29 5.2
04_03_1017 + 21747044-21748051 29 5.2
03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775 29 5.2
10_08_0685 - 19875801-19875980,19876074-19876277,19876392-198767... 28 6.9
04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153 28 6.9
01_05_0159 + 18716055-18716272,18716900-18718529,18718622-187186... 28 6.9
09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664 28 9.1
07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323 28 9.1
02_04_0114 + 19879468-19880671,19882007-19882179,19882265-198826... 28 9.1
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Frame = +3
Query: 369 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 545
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI +
Sbjct: 105 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 163
Query: 546 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGKI 665
I + + + +E++ TGI +D++ A+G KI
Sbjct: 164 YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKI 203
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 41.1 bits (92), Expect = 0.001
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Frame = +3
Query: 369 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 545
GE V + +GT G+ + +G ++ PV + LGR+ N G+PID PI +
Sbjct: 65 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPILPEA 123
Query: 546 TAAI------HAEAPEFVDMSVQ---QEILVTGIKVVDLLAPYAKGGKI 665
I A A ++ S + +E++ TGI +D++ A+G KI
Sbjct: 124 YLDISDFDIGFAGAGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKI 172
>10_08_0584 + 18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 31.1 bits (67), Expect = 0.98
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -3
Query: 445 PESSTGCPRTKPSVPSMAMVRTVFSPKCCATSKTKRGDRFCTSRAFR 305
P ++ G PR PS P + PKC + G FCT F+
Sbjct: 868 PGATAGRPRLSPSDPEVVGTEAE-CPKCAQLKLLREGAAFCTQDCFK 913
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = -1
Query: 684 GPAKQPQSFHLWHKERADRRLLYQLRESPAAQTCRQTL 571
GP + P S L HK R RR+ QLR SP + TL
Sbjct: 72 GPLQNPDSGRLRHKPRRRRRIALQLR-SPGLRASAPTL 108
>12_02_0893 +
24077634-24078379,24079347-24080412,24080741-24080866,
24081278-24081384,24081720-24081744
Length = 689
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 511 GSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMV 386
GSP+ R + AP G+ G+P++ ++PS+P +++
Sbjct: 452 GSPVYAQSRSPIRAPLGVSFGDPKAQ----NSRPSIPHPSLI 489
>11_06_0693 - 26334574-26336121
Length = 515
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -1
Query: 651 WHKERADRRLLYQLRESPAAQTCRQTLEL 565
WH A+RRLL+ L SP A+ R+ LEL
Sbjct: 20 WHPRTAERRLLHLLHHSPPAR--RRPLEL 46
>03_02_0325 -
7467862-7468054,7468668-7468752,7469124-7469290,
7470130-7471133
Length = 482
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -2
Query: 503 DYIDDASEGFSSHRDTNG*ARVEYGLPTD*AFSTVHGNGTYSVLSQVLRHLQDQAGRSI 327
D+ DD +EG + +D +G A + YGL TV G +VL+Q+ + L++ S+
Sbjct: 171 DHEDDDAEGAEAEKDADGEAALSYGL-------TVASKGQEAVLAQLDKVLEEYTTFSV 222
>05_04_0098 +
17982196-17982355,17982761-17982978,17983232-17983418,
17983957-17984057,17984708-17984885,17984956-17985233
Length = 373
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 412 PSVPSMAMVRTVFSPKCCATSK 347
P+ PS A VR SP+CC+ S+
Sbjct: 3 PTAPSPASVRAAASPRCCSRSR 24
>05_02_0100 +
6594787-6594878,6595443-6595728,6595809-6595887,
6595964-6596013,6597281-6597478,6597555-6597612,
6598388-6598496,6599253-6599321,6599684-6599812,
6599970-6600082,6600386-6600479,6602827-6602917,
6604145-6604233,6604715-6604856,6605849-6606196,
6606314-6607408
Length = 1013
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 390 IAMDGTEGLVRGQPVLDSGSPIRIPVGAE-TLGRIINVIGEPIDERGPI 533
I D E + P S S +P AE L I NV+GE +D+ GP+
Sbjct: 128 IVPDSEEESLPSSPETSSTSNYDMPDLAEQNLEHIYNVLGEMVDKEGPV 176
>06_01_1084 +
8883301-8883515,8883736-8884063,8884764-8885022,
8885581-8885681
Length = 300
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 563 RSSRVCRHVCAAGDSRNWYKSRRSARSLCQRWKDWGCLAGPGVG 694
R+S V V G + W R SA C W+D+G +G G+G
Sbjct: 195 RASAVDTMVVLTGARQRWKIGRASAVLAC--WEDFGSDSGEGIG 236
>06_02_0176 +
12637287-12637376,12638108-12638280,12638631-12638743,
12639125-12639313,12639397-12639464,12639601-12639684,
12639791-12639844,12640445-12640525,12640615-12640708,
12640830-12640903,12640976-12641086,12641299-12641355,
12641458-12641562,12641656-12641772,12641900-12642003,
12642229-12642394,12642513-12642641
Length = 602
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 533 PNRQDCCYPCRSSRVCRHVCAAGDSRNWYKSRRSARSLCQRWKDWGCLAGP 685
P++ DC Y VC H+ AAG + + + RS +WK C A P
Sbjct: 422 PSKFDCDYAYVLGHVCYHILAAG-LNGYMATVTNLRSPVNKWK---CGAAP 468
>05_03_0637 - 16465433-16466242
Length = 269
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = -3
Query: 715 FHNQYSFAHTRSXQTTPIFPPLA*GASRSTTFIPVTRISCCTDMSTNSGASAWIAAVLS 539
FH+Q H Q P PPL A+ ST+ + T + ++ + A+ +AA +S
Sbjct: 152 FHHQPFHHHLLQPQPPPPPPPLYYAATASTSTVTTTTTAPPPQLAAAAPAAVLVAAAVS 210
>04_03_1017 + 21747044-21748051
Length = 335
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = -3
Query: 475 SAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCCATSKTKRGDRFCTSRAFRIGG 296
S P R P+ + P + P +PS A TV P+ + R C+SRA R+ G
Sbjct: 266 STPPPPRAASPDYTPSTPPSSP-LPSAAESFTVPPPRRYHPYQRSRSGGACSSRAIRVIG 324
>03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775
Length = 1441
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -3
Query: 631 STTFIPVTRISCC--TDMSTNSGASAWIAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGI 458
S+ F+P+ +S TD++T SGA +W VL + IG + + RV +
Sbjct: 152 SSLFLPLYFVSSGLKTDVTTISGAKSWGLLVLVMTTACAGKIGGTVAASLLMRVPLREAL 211
Query: 457 RMG 449
+G
Sbjct: 212 ALG 214
>10_08_0685 -
19875801-19875980,19876074-19876277,19876392-19876724,
19876834-19877115,19877210-19877425,19879752-19880024
Length = 495
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -2
Query: 611 YENLLLHRHVDKLWS--FGMDSSSLVGWDGTALVNRFADYIDDASE 480
++ L+L +D +++ FG D ++L DG+ +RFA DDASE
Sbjct: 162 FQGLMLRATMDSIFTIAFGTDLNTL---DGSGEGSRFAAAFDDASE 204
>04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153
Length = 1112
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -1
Query: 735 WATLLISSIINTVLPTPGPAKQPQSF-HLWHKERADRRLLYQLRE 604
W T S +T+LPT GP + Q + L H + ++ R L Q+++
Sbjct: 142 WGTF--ESPADTILPTQGPFSEVQLYSRLTHTDYSNGRFLLQVKD 184
>01_05_0159 +
18716055-18716272,18716900-18718529,18718622-18718693,
18718800-18719213
Length = 777
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 503 DYIDDASEGFSSHRDTNG*ARVEYGL 426
DY+D A +G S H+ G + YGL
Sbjct: 177 DYVDPADQGSSDHKSIKGSLNLFYGL 202
>09_06_0052 - 20510441-20510590,20510692-20511058,20511183-20511664
Length = 332
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 469 PTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSP 368
P G++ P ++ GC P +P M + R V P
Sbjct: 40 PVGVQAAFPHAAAGCAPPPPVMPVMIVYRVVQPP 73
>07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323
Length = 340
Score = 27.9 bits (59), Expect = 9.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 688 CGQNCIDYGTDQQCC 732
C C+ +GTD+QCC
Sbjct: 268 CKSACLAFGTDEQCC 282
>02_04_0114 +
19879468-19880671,19882007-19882179,19882265-19882605,
19882698-19882977,19883070-19883267,19883380-19883652
Length = 822
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 644 LCQRWKDWGCLAG-PGVGKTVLIMELINNVA 733
LC+R K+ L G PGVGKT + L VA
Sbjct: 212 LCRRTKNSAVLVGAPGVGKTAIAEGLARRVA 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,137,506
Number of Sequences: 37544
Number of extensions: 503749
Number of successful extensions: 1590
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1589
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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