Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1898
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 225 2e-59
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 67 1e-11
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 67 1e-11
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 51 1e-06
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 47 2e-05
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 47 2e-05
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 32 0.50
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 32 0.50
Z70684-5|CAA94600.1| 233|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z70684-3|CAA94598.1| 233|Caenorhabditis elegans Hypothetical pr... 30 1.5
U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam ... 29 2.7
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 29 2.7
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 29 2.7
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 29 4.7
AF040641-2|AAB94946.1| 311|Caenorhabditis elegans Hypothetical ... 29 4.7
Z81489-7|CAB04009.1| 225|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z68003-2|CAA91976.2| 560|Caenorhabditis elegans Hypothetical pr... 28 8.1
AC024839-1|AAF60832.2| 232|Caenorhabditis elegans Thaumatin fam... 28 8.1
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 225 bits (551), Expect = 2e-59
Identities = 116/190 (61%), Positives = 133/190 (70%), Gaps = 5/190 (2%)
Frame = +3
Query: 117 CRVGRLATKTVVNNATEKASLVTGAAVNKRDYAAKASXXXXXXXXXXXXXXXXXX----- 281
C + + + NN K + TG A + A K S
Sbjct: 24 CALPAASIRLSSNNVESKKGIHTGVATQQAAAATKVSAKATAANASGRIVAVIGAVVDVQ 83
Query: 282 FEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRI 461
F++NLPPILN LEV RSPRL+LEV+QHLG+N VR IAMDGTEGLVRGQPV D+G PI+I
Sbjct: 84 FDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDPIKI 143
Query: 462 PVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLA 641
PVG ETLGRI+NVIGEPIDERGPI + AAIHAEAPEFV+MSV+QEILVTGIKVVDLLA
Sbjct: 144 PVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLA 203
Query: 642 PYAKGGKIGV 671
PYAKGGKIG+
Sbjct: 204 PYAKGGKIGL 213
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = +2
Query: 668 GCLAGPGVGKTVLIMELINNVAQAXGG 748
G G GVGKTVLIMELINNVA+A GG
Sbjct: 212 GLFGGAGVGKTVLIMELINNVAKAHGG 238
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 66.9 bits (156), Expect = 1e-11
Identities = 31/101 (30%), Positives = 55/101 (54%)
Frame = +3
Query: 354 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 533
+A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GPI
Sbjct: 63 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122
Query: 534 PTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKG 656
+ + + +AP + +E +VTG+K VD L P +G
Sbjct: 123 ANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRG 163
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 66.9 bits (156), Expect = 1e-11
Identities = 31/101 (30%), Positives = 55/101 (54%)
Frame = +3
Query: 354 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 533
+A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GPI
Sbjct: 90 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149
Query: 534 PTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKG 656
+ + + +AP + +E +VTG+K VD L P +G
Sbjct: 150 ANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRG 190
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Frame = +3
Query: 366 LGENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTD 542
+ +N +GT G+ + + +G +R PV + LGRI N G+PID+ P+ +
Sbjct: 71 ISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAE 130
Query: 543 KTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGKIGV 671
I+ + +E++ TGI +D++ A+G KI +
Sbjct: 131 DFLDINGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPI 173
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +3
Query: 498 VIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKG 656
V+G PID +GPI + + + +AP + +E +VTG+K VD L P +G
Sbjct: 103 VLGNPIDGKGPIANARRSRVEVKAPGIIPRLSVREPMVTGVKAVDSLVPIGRG 155
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/77 (31%), Positives = 41/77 (53%)
Frame = +3
Query: 441 SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGI 620
+G R PV + LGRI N G+PID+ P+ + I+ + + +E++ TGI
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDYLDINGQPINPFNRIYPEEMIQTGI 168
Query: 621 KVVDLLAPYAKGGKIGV 671
+D++ A+G KI +
Sbjct: 169 SAIDVMNSIARGQKIPI 185
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 31.9 bits (69), Expect = 0.50
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Frame = -3
Query: 703 YSFAHTRSXQTTPIFPPLA*GASRSTTFIPVTRISCCTDMSTNSGASAWIAAVLSVGMGP 524
Y + + T + PP G TF PVT +S + +T + + + P
Sbjct: 446 YGYEGGANKPTVVLAPPTTPGP----TFYPVTTVSTMSPPTTVTVPTTPTPVPTTTNTPP 501
Query: 523 RS-SIGSPITL-MMRPRV---SAPTGIRMGEPESSTGCPRTKPSVPS 398
+ + +P T+ M P + P G P + T P TKP+VPS
Sbjct: 502 ANPTTATPTTVGTMTPSTGTTTVPVPTTTGSPTTQTTAPVTKPTVPS 548
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 31.9 bits (69), Expect = 0.50
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 405 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 521
T G+ G PVL +G P+ + +G +G I + I P+ +
Sbjct: 59 TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97
>Z70684-5|CAA94600.1| 233|Caenorhabditis elegans Hypothetical
protein F28D1.5 protein.
Length = 233
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 688 CGQNCIDYGTDQQCCPSPWG 747
C C+ Y TDQ+CC +G
Sbjct: 168 CKSGCLGYNTDQECCRGAYG 187
>Z70684-3|CAA94598.1| 233|Caenorhabditis elegans Hypothetical
protein F28D1.3 protein.
Length = 233
Score = 30.3 bits (65), Expect = 1.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 688 CGQNCIDYGTDQQCCPSPWG 747
C C+ Y TDQ+CC +G
Sbjct: 168 CKSGCLGYNTDQECCRGAYG 187
>U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam
protein 3 protein.
Length = 487
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 399 DGTEGLVRGQPV-LDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPE 575
D +G + G+P+ +D G ++ P G E + ++ N GEP+DE A I + E
Sbjct: 152 DTVKGALLGEPITIDCG--VKGPSGKEPMIQMTNGNGEPLDEEIWTIAGNEATIDSLKKE 209
Query: 576 FVDMSV 593
+++V
Sbjct: 210 HAELTV 215
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = -3
Query: 586 MSTNSGASAWIAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPS 407
+ T G +A +A M RS P+T M P + P S+ PR
Sbjct: 9 LPTEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 68
Query: 406 VPSMAMVRTVFSP 368
P+ A +T P
Sbjct: 69 TPTAAPPKTCAPP 81
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = -3
Query: 586 MSTNSGASAWIAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPS 407
+ T G +A +A M RS P+T M P + P S+ PR
Sbjct: 138 LPTEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 197
Query: 406 VPSMAMVRTVFSP 368
P+ A +T P
Sbjct: 198 TPTAAPPKTCAPP 210
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 28.7 bits (61), Expect = 4.7
Identities = 24/84 (28%), Positives = 32/84 (38%)
Frame = +2
Query: 173 ITGDWSRCEQT*LCSQGFRQRAR*GSCRYWCRSGCSV*RQLAADPKCP*GAKSISPXXXX 352
I GDWS+C + C G+R+R+ SC S C R+ KC + P
Sbjct: 1494 IIGDWSKCSAS--CGGGWRRRS--VSC---TSSSCDETRKPKMFDKC--NEELCPPLTNN 1544
Query: 353 XXXXXXREHCTYHCHGRY*RLSPW 424
HC+ C G R W
Sbjct: 1545 SWQISPWTHCSVSCGGGVQRRKIW 1568
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 28.7 bits (61), Expect = 4.7
Identities = 24/84 (28%), Positives = 32/84 (38%)
Frame = +2
Query: 173 ITGDWSRCEQT*LCSQGFRQRAR*GSCRYWCRSGCSV*RQLAADPKCP*GAKSISPXXXX 352
I GDWS+C + C G+R+R+ SC S C R+ KC + P
Sbjct: 1494 IIGDWSKCSAS--CGGGWRRRS--VSC---TSSSCDETRKPKMFDKC--NEELCPPLTNN 1544
Query: 353 XXXXXXREHCTYHCHGRY*RLSPW 424
HC+ C G R W
Sbjct: 1545 SWQISPWTHCSVSCGGGVQRRKIW 1568
>AF040641-2|AAB94946.1| 311|Caenorhabditis elegans Hypothetical
protein D1069.1 protein.
Length = 311
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Frame = -2
Query: 173 CFFSSIVYYCLRSQTAYSADSRKHF-----DN--IFENLVERQQSRIELVTKITNSLRND 15
C F SIV Y +R Q S S+ F DN FE L+ RQ +++ LR
Sbjct: 131 CLFISIVVYGVRMQYKTSEFSQNKFFSKKIDNSFFFEFLISRQSKIFKIILISKQKLRKF 190
Query: 14 PXQ 6
P Q
Sbjct: 191 PFQ 193
>Z81489-7|CAB04009.1| 225|Caenorhabditis elegans Hypothetical
protein C55A1.9 protein.
Length = 225
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = -1
Query: 696 LPTPGPA----KQPQSFHLWHKERADRRLLYQLRE 604
LP P P K Q+ HLWHKE + + ++ +R+
Sbjct: 189 LPPPAPRVQRPKNGQNRHLWHKEESSQGVIRGVRK 223
>Z68003-2|CAA91976.2| 560|Caenorhabditis elegans Hypothetical
protein E02H4.2 protein.
Length = 560
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 77 LNFQKYYRNVSYCLQSRPFGYEDSSKQC 160
L QKYY + Y LQS+P +K C
Sbjct: 130 LPHQKYYNSEQYALQSQPCNQYQMNKLC 157
>AC024839-1|AAF60832.2| 232|Caenorhabditis elegans Thaumatin family
protein 5 protein.
Length = 232
Score = 27.9 bits (59), Expect = 8.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 688 CGQNCIDYGTDQQCCPSPWG 747
C C+ Y DQ+CC +G
Sbjct: 168 CKSGCVAYNNDQECCRGAFG 187
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,374,040
Number of Sequences: 27780
Number of extensions: 418166
Number of successful extensions: 1170
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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