Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1897
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 169 2e-42
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 167 1e-41
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 127 8e-30
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 54 2e-07
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 53 2e-07
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 52 6e-07
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 50 3e-06
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 35 0.079
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 35 0.079
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 32 0.42
11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610 31 0.74
05_03_0629 + 16376575-16376689,16376792-16376839,16376927-163770... 30 1.7
04_01_0579 - 7515242-7516241,7516366-7516393,7516574-7516631 29 3.9
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 169 bits (411), Expect = 2e-42
Identities = 74/115 (64%), Positives = 98/115 (85%)
Frame = -2
Query: 464 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 285
+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGK+RLG
Sbjct: 124 KPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLG 183
Query: 284 ALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 120
++VH+KT + L LT V++ D+ FSK++EAIK NFN++++E+RK WGGGV+G+KS
Sbjct: 184 SIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKS 238
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 167 bits (405), Expect = 1e-41
Identities = 71/115 (61%), Positives = 99/115 (86%)
Frame = -2
Query: 464 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 285
+P ++ G + VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG
Sbjct: 109 KPIVVKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLG 168
Query: 284 ALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 120
++VH+KT + L LT V++ D+ FSK++EAIK+NFN++++E+RK WGGG++G+KS
Sbjct: 169 SIVHKKTASVLCLTTVKNEDKLEFSKILEAIKSNFNDKFDEVRKKWGGGIMGSKS 223
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 127 bits (307), Expect = 8e-30
Identities = 62/115 (53%), Positives = 84/115 (73%)
Frame = -2
Query: 464 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 285
+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM
Sbjct: 108 KPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKM-------------- 153
Query: 284 ALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKS 120
+VH+KT + L LT V++ D+ FSK++EAIK NFN++++E+RK WGGGV+G+KS
Sbjct: 154 EIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKS 208
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 53.6 bits (123), Expect = 2e-07
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Frame = -2
Query: 452 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GAL 279
++ G V K + + + L +IA ++ PI+++ +P LC + +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGT 104
Query: 278 VHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGG 141
R TC L LT G+ V E +KT++++ E+ + G
Sbjct: 105 TKRPTCCVLVLTKPAKGELE--EDVKEKLKTDYDQVMSEVAEAGNG 148
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = -2
Query: 452 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 279
++ G N TK + + A+ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 92
Query: 278 VHRKTCTCLALTNVESGDRASFSKVVEAIK 189
V R C +N S R + + AI+
Sbjct: 93 VTRPVIACSVTSNEASNLRDPINNLKVAIE 122
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 51.6 bits (118), Expect = 6e-07
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = -2
Query: 452 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 279
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 278 VHRKTCTCLALTNVESGDRASFSKVVEAIK 189
V R C +N S + + +AI+
Sbjct: 95 VTRPVIACSVTSNEGSQLKTPIQNLKDAIE 124
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/98 (25%), Positives = 45/98 (45%)
Frame = -2
Query: 452 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 273
++ G V K + + L VIA ++ PI+++ +P LC + +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGT 104
Query: 272 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 159
K TC L + +V E +K++++ E+
Sbjct: 105 TKRPTCCVLVMTKPAKGEINEEVKEKLKSDYDHVVAEV 142
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 34.7 bits (76), Expect = 0.079
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -2
Query: 443 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 285
G K +EK AQL V+A D D + V + ALC + V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 34.7 bits (76), Expect = 0.079
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -2
Query: 443 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 285
G K +EK AQL V+A D D + V + ALC + V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>02_01_0014 -
87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 32.3 bits (70), Expect = 0.42
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +1
Query: 49 YSAQPCFCANSRALAFSSLA---MRALDLLPRTPPPQCLRSSS*RS-LKFVLMASTTFEK 216
Y A PCFCA + + LA ++AL + + P CLR+ + + L ++ ST ++
Sbjct: 175 YGAIPCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQR 234
Query: 217 EARSPDSTFVR 249
A S + R
Sbjct: 235 VALSTAANICR 245
>11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610
Length = 439
Score = 31.5 bits (68), Expect = 0.74
Identities = 23/80 (28%), Positives = 34/80 (42%)
Frame = +1
Query: 85 ALAFSSLAMRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKHVH 264
ALAF L + A LL PP + S R ++ + + R P+ + A
Sbjct: 9 ALAFF-LLVAAASLLSLPPPSLAVTSPYVRPKPRATLSLLKDDDDGRKPEQVHISAVGSD 67
Query: 265 VLRCTSAPRRDLPLTMQYGT 324
+R T D P T++YGT
Sbjct: 68 KMRVTWITGGDAPATVEYGT 87
>05_03_0629 +
16376575-16376689,16376792-16376839,16376927-16377012,
16377791-16377878,16378387-16378472,16378604-16378690,
16379111-16379293,16379387-16379470,16379590-16379651,
16379752-16379827,16379906-16379968,16380060-16380141,
16380840-16380916,16381502-16381549,16381681-16381743
Length = 415
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +1
Query: 73 ANSRALAFSSLAMRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPD 234
A + + A SS R L R+PPP LR + R + V A T E +A +P+
Sbjct: 8 AAASSTAASSATFRPPLLSLRSPPPSSLRLNRRRHFQVVRAAETDKETKANAPE 61
>04_01_0579 - 7515242-7516241,7516366-7516393,7516574-7516631
Length = 361
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 70 CANSRALAFSSLAMRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEK 216
CA S A+ FS+ ++ PRT + ++ S F T+FEK
Sbjct: 182 CARSEAMIFSANLCARINFAPRTTRDRIIQGPKTISQMFPFFKGTSFEK 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,979,073
Number of Sequences: 37544
Number of extensions: 259462
Number of successful extensions: 722
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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