Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1897
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   159   2e-39
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   159   2e-39
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    54   8e-08
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    48   9e-06
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively...    29   3.5  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  159 bits (386), Expect = 2e-39
 Identities = 68/116 (58%), Positives = 93/116 (80%)
 Frame = -2

Query: 464 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 285
           RPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+KGK+ LG
Sbjct: 133 RPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192

Query: 284 ALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSN 117
            +V RKT   +AL +V   D+++ +K+VE +  NF+ER+EE+RKHWGGGV+  KS+
Sbjct: 193 TVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSD 248


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  159 bits (386), Expect = 2e-39
 Identities = 68/116 (58%), Positives = 93/116 (80%)
 Frame = -2

Query: 464 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 285
           RPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK  VPY I+KGK+ LG
Sbjct: 113 RPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172

Query: 284 ALVHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSN 117
            +V RKT   +AL +V   D+++ +K+VE +  NF+ER+EE+RKHWGGGV+  KS+
Sbjct: 173 TVVRRKTTAAVALVDVNPEDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSD 228


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
 Frame = -2

Query: 452 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 279
           ++ G N  TK + +  ++++V+A D +P+E++L LP LC    VPY  V+ K+ LG    
Sbjct: 35  LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94

Query: 278 VHRKTCTCLALTNVESGDRASFSKVVEAIK 189
           V R         N  S  ++   K+ E ++
Sbjct: 95  VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 20/89 (22%), Positives = 44/89 (49%)
 Frame = -2

Query: 455 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 276
           T+R G   V K + + +  + ++A +V PI++   +P +C +  +PY  +  + +LG  V
Sbjct: 68  TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127

Query: 275 HRKTCTCLALTNVESGDRASFSKVVEAIK 189
             +  + L         +  + +V EA++
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAEALR 156


>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
           protein ZC504.4d protein.
          Length = 1072

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 109 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 258
           MRAL L+PR PPP+  R+    + KF     T   K+      T    +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285


>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
           protein ZC504.4c protein.
          Length = 1096

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 109 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 258
           MRAL L+PR PPP+  R+    + KF     T   K+      T    +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285


>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
           protein ZC504.4b protein.
          Length = 1082

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 109 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 258
           MRAL L+PR PPP+  R+    + KF     T   K+      T    +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285


>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
           protein ZC504.4a protein.
          Length = 1087

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 109 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 258
           MRAL L+PR PPP+  R+    + KF     T   K+      T    +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285


>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
           spliced serine/threonineprotein kinase MIG-15 protein.
          Length = 1087

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 109 MRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKH 258
           MRAL L+PR PPP+  R+    + KF     T   K+      T    +H
Sbjct: 237 MRALFLIPRNPPPKLKRNKK-WTKKFETFIETVLVKDYHQRPYTGALLRH 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,910,590
Number of Sequences: 27780
Number of extensions: 198617
Number of successful extensions: 504
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)