Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1896
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin st...    28   6.8  
M32877-1|AAA28001.1|  669|Caenorhabditis elegans daf-1 protein.        28   6.8  
AF067616-10|AAC19189.2|  668|Caenorhabditis elegans Abnormal dau...    28   6.8  
AF067616-9|AAP82657.1|  669|Caenorhabditis elegans Abnormal daue...    28   6.8  

>U37430-4|AAB52675.1| 1616|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 1 protein.
          Length = 1616

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 681  SYVLI-EKCFTTEVFLKYCEWYRVFDVSSIKSYTFNLNLTYSYELSNESPHQNPRLSWNR 505
            SY+L  E+C   E  L   + YR +D    +S  ++   TY YE  N +  Q  + S  +
Sbjct: 1470 SYLLKNEECEAEEERLSEKKNYRKYDERKYESEEYSFEETYDYEQENTNKKQKNQRSQKK 1529

Query: 504  T 502
            +
Sbjct: 1530 S 1530


>M32877-1|AAA28001.1|  669|Caenorhabditis elegans daf-1 protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 6   LGPSEPKPTSPARGAP 53
           LGP +PK  SPA GAP
Sbjct: 615 LGPQKPKDESPANGAP 630


>AF067616-10|AAC19189.2|  668|Caenorhabditis elegans Abnormal dauer
           formation protein1, isoform b protein.
          Length = 668

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 6   LGPSEPKPTSPARGAP 53
           LGP +PK  SPA GAP
Sbjct: 614 LGPQKPKDESPANGAP 629


>AF067616-9|AAP82657.1|  669|Caenorhabditis elegans Abnormal dauer
           formation protein1, isoform a protein.
          Length = 669

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 6   LGPSEPKPTSPARGAP 53
           LGP +PK  SPA GAP
Sbjct: 615 LGPQKPKDESPANGAP 630


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,826,762
Number of Sequences: 27780
Number of extensions: 300188
Number of successful extensions: 617
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)