Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1894
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    32   0.083
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    28   1.8  

>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 32.3 bits (70), Expect = 0.083
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
 Frame = +2

Query: 344  MSGDLNPLHIDPNXA--TAXGHXKPILHGLXSLGFSARHXLAKFXGNDSSNVKALXARFX 517
            +SGD NP+H+ P  A          I HG+ +   + R        N    VK     F 
Sbjct: 1572 VSGDYNPIHVSPTFAAFVELPGTHGITHGMYTSAAARRFVETYAAQNVPERVKHYEVTFV 1631

Query: 518  KPVMPGETLVTXM 556
              V+P   L+T +
Sbjct: 1632 NMVLPNTELITKL 1644


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 22/70 (31%), Positives = 30/70 (42%)
 Frame = +3

Query: 156 TVKYSKISNWYAEPTSTFSC*AKEVSVDPAIXRTLSXXQTHRSEILMPSWNNAPPKTRPL 335
           +V   K  N+Y+ P  + S      S+   I R  S  +T R   L    N+AP  TR  
Sbjct: 94  SVTNMKKENFYSRPNVSSS------SILLTIKRATSSQETKRDRPLPNIRNSAPSATRSH 147

Query: 336 STECLVTSIL 365
           ST C+    L
Sbjct: 148 STPCVAPGYL 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,838
Number of Sequences: 5004
Number of extensions: 49670
Number of successful extensions: 97
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)