Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1893
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   5.1  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    26   5.1  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    26   6.7  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   8.9  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.9  

>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 2/110 (1%)
 Frame = +3

Query: 180 LPSPVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSIWTCSTSRRKRFR*RLPTGTS 359
           L  P++  P TTSD   +     V+S+P+    R    S+    T    +      T ++
Sbjct: 260 LDEPIKALPSTTSDAPSSLLNTNVSSSPS--KFRKFLSSVIPAKTDLSAK---ESLTSST 314

Query: 360 WWKASTKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRGC--HQTGFSPSP 503
               S K RK S+G+   SS  VT   K R+  + N     H T F   P
Sbjct: 315 RLSTSYKTRKRSSGV-AFSSETVTSSSKERKRSVENEMLKPHPTIFESPP 363


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +3

Query: 414 SSSDVTRCLKARRLRLWNRGCHQTGFSPSPRRG 512
           SS   TR  +  R     RGC  T   P PR G
Sbjct: 319 SSKGPTRLYEVARFNCTTRGCEYTQNIPCPRAG 351


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 188 ACPVLSEDYFRPWRQLAAAS 247
           +CP+ +EDY++ + Q+ AAS
Sbjct: 242 SCPLCNEDYYKYFLQMDAAS 261


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 194 PVLSEDYFRPWRQLAAASRDLGSSIKADKDKFQVNL 301
           P  SED   P + L  A  ++   +K+D ++F+V++
Sbjct: 439 PTSSEDNLHPLQPLTTADEEMDLDLKSD-ERFKVDI 473


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 189 PVQCSPKTTSDRGDNSRLHLVTSAPA*RPTRTSSKSI 299
           PVQ SP  TSD+ D  +L+  +      P    S+SI
Sbjct: 622 PVQVSPLFTSDKNDPLQLNPQSDDSTSSPKHGKSRSI 658


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,842
Number of Sequences: 5004
Number of extensions: 50420
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)