Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1893
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 38 0.009
03_02_0484 + 8805053-8805538 38 0.009
03_02_0483 - 8804021-8804485 38 0.009
03_02_0478 + 8775892-8776377 37 0.020
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 37 0.020
01_01_0229 - 1943473-1943922 35 0.061
01_01_0231 + 1951047-1951499 35 0.081
01_01_0227 + 1933247-1933699 34 0.14
11_02_0041 - 7669692-7670312 33 0.33
02_05_0494 + 29486960-29487454 33 0.33
02_02_0077 - 6586638-6587165 32 0.43
04_04_0017 + 22176759-22177406 31 1.0
01_01_0599 - 4448290-4448790 31 1.3
02_05_0308 - 27754340-27754634,27755591-27755696,27755781-277558... 30 1.7
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761... 30 2.3
05_03_0029 - 7525408-7525634,7526253-7526457 30 2.3
12_02_0665 + 21670956-21671834,21672563-21672583 29 4.0
01_05_0796 - 25297792-25298514 29 5.3
07_03_0725 + 20991640-20992471,20993308-20993418,20993542-209937... 28 7.1
03_02_0467 + 8707777-8707892,8708030-8708096,8708190-8708260,870... 28 7.1
02_05_0276 + 27378994-27380094,27380185-27380250,27380586-273806... 28 7.1
01_01_0228 + 1940149-1940649 28 7.1
01_01_0277 + 2274383-2274465,2274889-2274955,2275040-2275110,227... 28 9.3
>03_02_0485 - 8808139-8808618
Length = 159
Score = 37.9 bits (84), Expect = 0.009
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +2
Query: 407 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRXVP 520
S +F+RR+ LPE PE +++ + +GVLT+T P+ P
Sbjct: 111 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 147
>03_02_0484 + 8805053-8805538
Length = 161
Score = 37.9 bits (84), Expect = 0.009
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +2
Query: 407 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRXVP 520
S +F+RR+ LPE PE +++ + +GVLT+T P+ P
Sbjct: 113 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 149
>03_02_0483 - 8804021-8804485
Length = 154
Score = 37.9 bits (84), Expect = 0.009
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +2
Query: 407 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRXVP 520
S +F+RR+ LPE PE +++ + +GVLT+T P+ P
Sbjct: 106 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 142
>03_02_0478 + 8775892-8776377
Length = 161
Score = 36.7 bits (81), Expect = 0.020
Identities = 15/35 (42%), Positives = 26/35 (74%)
Frame = +2
Query: 407 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 511
S +F+RR+ LP+ A PE +++ + +GVLT+T P+
Sbjct: 113 SGKFLRRFRLPDNAKPEQIKASM-ENGVLTVTVPK 146
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 36.7 bits (81), Expect = 0.020
Identities = 24/65 (36%), Positives = 33/65 (50%)
Frame = +2
Query: 407 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRXVPDAVKGERKXPSHXPVPFQGDXG 586
S QF+RR+ LPE A + V++ L +GVLT+T P K E K P + G
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVP-------KAEVKKPEVKAIEISGGEN 153
Query: 587 PKRGE 601
RG+
Sbjct: 154 ISRGK 158
>01_01_0229 - 1943473-1943922
Length = 149
Score = 35.1 bits (77), Expect = 0.061
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 407 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 511
S QF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 101 SGQFMRRFRLPENAKVDQVKASM-ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 34.7 bits (76), Expect = 0.081
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 407 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 511
S QF+RR+ LPE A + V++ + +GVLT+T P+
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVPK 135
>01_01_0227 + 1933247-1933699
Length = 150
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +2
Query: 407 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPRXVPDAVKGERKXPSHXPVPFQG 577
S +F RR+ LP GA + V + + +GVLT+T P K E K P +P G
Sbjct: 102 SGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVP-------KEETKKPQLKAIPISG 150
>11_02_0041 - 7669692-7670312
Length = 206
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +2
Query: 413 QFVRRYALPEGAAPETVESRLSSDGVLTITAPR 511
+F RR+ +P GA V +RL DGVLT+T P+
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPK 172
>02_05_0494 + 29486960-29487454
Length = 164
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +2
Query: 410 RQFVRRYALPEGAAPETVESRLSSDGVLTITAPR 511
R V ++ LPE AA + +R++ DGVLT+T P+
Sbjct: 106 RAAVTQFRLPEDAAADEASARMA-DGVLTVTVPK 138
>02_02_0077 - 6586638-6587165
Length = 175
Score = 32.3 bits (70), Expect = 0.43
Identities = 22/60 (36%), Positives = 29/60 (48%)
Frame = +2
Query: 413 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRXVPDAVKGERKXPSHXPVPFQGDXGPK 592
+F+RR+ LPE A + V + DGVLT+T + P E K P V G PK
Sbjct: 117 KFMRRFPLPESADLDGVRAEY-KDGVLTVTVDKKPPP----EPKKPRVVEVKVAGAGEPK 171
>04_04_0017 + 22176759-22177406
Length = 215
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 413 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRXVPDAVKGER 541
+F R+ LP+ A +++ + L + GVLT+ + PD +KG R
Sbjct: 141 RFWRQLRLPDNADLDSIAASLDN-GVLTVRFRKLAPDQIKGPR 182
>01_01_0599 - 4448290-4448790
Length = 166
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 413 QFVRRYALPEGAAPETVESRLSSDGVLTITAPRXVPDAVK 532
+F+R++ LP+ A + + S + DGVLT+T + P K
Sbjct: 118 KFMRKFVLPDNADVDKI-SAVCQDGVLTVTVEKLPPPEPK 156
>02_05_0308 -
27754340-27754634,27755591-27755696,27755781-27755855,
27756039-27757410
Length = 615
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -2
Query: 342 VFTEISSGEKCCTSRLTWNLSLSAFMLEPRSRD 244
+F ++S GE+C ++ T+N+ +SA + R+ D
Sbjct: 401 LFEKMSKGEECLPNQDTYNIIISAMFMRKRAED 433
>05_03_0619 +
16274255-16274396,16274775-16274848,16275111-16276139,
16276484-16276702,16277228-16277250,16277482-16277606,
16279480-16279670,16280202-16280360,16281359-16281598
Length = 733
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = -3
Query: 464 PQSQAPRLQAARNVGRTA-LKYTRARLSSLRACLPP--RCTRRQSSPKSLPARSAARPD* 294
P+ Q P + R ++ RA + + C+ P R R L A +A+
Sbjct: 598 PRKQMPEFETTRYFNLAGFVEQLRALAAEVGYCITPEYRVVRNFEDKGVLEALWSAKSSP 657
Query: 293 LGTCPCRPL 267
GTCP RPL
Sbjct: 658 YGTCPSRPL 666
>05_03_0029 - 7525408-7525634,7526253-7526457
Length = 143
Score = 29.9 bits (64), Expect = 2.3
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Frame = -1
Query: 349 VGSLHRNLFRREVLHVQIDLELVLVGL---YAGAEVTRCSRELSPRSEVVFGEHWTGDGS 179
V S R R + +IDL+L G Y EV R RE R FG GDG+
Sbjct: 11 VDSRERKKLRNQSKPPRIDLQLRSHGQARSYVRHEVARRKRERR-RDGYTFGSDSNGDGA 69
Query: 178 QHVVRG*RQSEILINKTTGPVVVTNAG 98
VR R + +L+ G +TN+G
Sbjct: 70 NGSVRVERWAPVLVPAMRG---MTNSG 93
>12_02_0665 + 21670956-21671834,21672563-21672583
Length = 299
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 416 FVRRYALPEGAAPETVESRLSSDGVL--TITAPRXVPDAVKGERKXPSHXPV 565
F+RR LP A+P SR+SS L + PR + PSH PV
Sbjct: 24 FLRRGILPSPASPLPFASRVSSAAPLRHRLPPPRFSLSPIPKTLSSPSHVPV 75
>01_05_0796 - 25297792-25298514
Length = 240
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = -3
Query: 464 PQSQAPRLQAARNVGRTALKYTRARLSSLRACLPPRCTRRQSSPKSLPARSA 309
P APR + VGR + TRA LR RC RR+ S S A A
Sbjct: 130 PARAAPRRSRSEKVGR-GRRPTRAASPELRRSESERCRRRRRSLSSSSASLA 180
>07_03_0725 +
20991640-20992471,20993308-20993418,20993542-20993739,
20993860-20993891,20993943-20994153,20994806-20995043,
20995507-20995657,20996171-20996533
Length = 711
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +2
Query: 137 DQDFGLALTPNDMLAAVACPVLSEDYFRPWRQLAAASRD 253
D+ FGLAL DM A AC F+ R L RD
Sbjct: 75 DRVFGLALCRGDMRDAAACAGCVSGAFQRLRALCGRDRD 113
>03_02_0467 +
8707777-8707892,8708030-8708096,8708190-8708260,
8708629-8708746,8708820-8708893,8709278-8709333,
8709448-8709531,8709611-8709698,8709786-8709863,
8710335-8710391,8710606-8711044
Length = 415
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 423 DVTRCLKARRLRLWNRGCHQTGFSPSPRR 509
+ + + A R+RLWN+G F P R+
Sbjct: 189 ETAKVVSANRVRLWNKGVDSESFHPKFRK 217
>02_05_0276 +
27378994-27380094,27380185-27380250,27380586-27380660,
27381927-27382025,27382353-27382436,27382519-27382868,
27383190-27383406,27383579-27383658,27383760-27383850,
27386544-27386672,27388771-27388858,27389967-27390097
Length = 836
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3
Query: 365 PPRCTRRQSSPKSLPARSAARP 300
P R TRR++SP S PA AA P
Sbjct: 94 PARSTRRKTSPGSSPASVAAAP 115
>01_01_0228 + 1940149-1940649
Length = 166
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +2
Query: 416 FVRRYALPEGAAPETVESRLSSDGVLTITAPRXVPDAVKGER 541
+V R LP G E V + VL IT R V KG+R
Sbjct: 52 YVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQR 93
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 416 FVRRYALPEGAAPETVESRLSSDGVLTITAPRXVPD 523
F R+ LP+ A + V + + G+LT+T P+ V D
Sbjct: 104 FFGRFHLPDDAVVDLVRASMDG-GMLTVTVPKVVTD 138
>01_01_0277 +
2274383-2274465,2274889-2274955,2275040-2275110,
2275550-2275667,2275755-2275828,2276094-2276149,
2276237-2276320,2276422-2276509,2276602-2276679,
2276814-2276870,2277074-2277578
Length = 426
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +3
Query: 423 DVTRCLKARRLRLWNRGCHQTGFSPSPR 506
+ + A R+RLWN+G F P R
Sbjct: 178 ETAHVISANRIRLWNKGVDSASFHPKFR 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,775,457
Number of Sequences: 37544
Number of extensions: 392738
Number of successful extensions: 1244
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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