Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1893
         (763 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF283275-1|AAG15376.1|  133|Anopheles gambiae small heat shock p...   101   2e-23
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    24   4.5  
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            23   7.8  

>AF283275-1|AAG15376.1|  133|Anopheles gambiae small heat shock
           protein protein.
          Length = 133

 Score =  101 bits (242), Expect = 2e-23
 Identities = 55/120 (45%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
 Frame = +2

Query: 251 DLGSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRY 430
           D GS++   KDKFQ+NLDVQ FSPEEISVK  D  ++V            Y+SR FVRRY
Sbjct: 3   DSGSAVNISKDKFQINLDVQQFSPEEISVKYVDNCVLVEGKHEEKQDDHGYVSRHFVRRY 62

Query: 431 ALPEGAAPETVESRLSSDGVLTITAPRXVPDAVKGERKXP-SHXPVPFQ---GDXGPKRG 598
            LP+G     + S LSSDG+LTIT PR   +    ER  P +H   P +   G   P+ G
Sbjct: 63  MLPKGHNEADIVSSLSSDGILTITCPRKEIEQKNEERSIPITHTGQPMKQVTGKAAPENG 122


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 548 PSHXPVPFQGDXGPKRGEPXMPKIXRXG 631
           PS   V   G  GP  GEP +P +   G
Sbjct: 407 PSRFDVAASGGVGPCFGEPPLPALPLPG 434


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 23.4 bits (48), Expect = 7.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 192 QATAASMSFGVSANPKS*STRRLGQWL*RTRG 97
           ++ A   S G  A PK+   + +G W   TRG
Sbjct: 139 RSMAGFRSLGSGAPPKAQGGKHVGNWEQHTRG 170


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 696,212
Number of Sequences: 2352
Number of extensions: 13503
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79002570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)