Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1889
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi...    26   6.6  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   8.7  

>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = -3

Query: 622 LLESMDXYDVNAPPTLRYKFQGLSIVTTDAPPFKCMYVHRSFTQSETQGECLFQLTLSAL 443
           LLE M   D+       Y   GL   +TD   F    + R+  + +  GE LF+  ++ +
Sbjct: 81  LLEPMSWADLKKFGIESYLVTGLEHPSTDVEIFCLHLIRRANWEKKEIGEPLFEAIMACI 140

Query: 442 LVRAVADS 419
             R++A S
Sbjct: 141 NSRSIAVS 148


>SPAC29B12.11c |||human WW domain binding protein-2
           ortholog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 533 PTLQMYVCTSVLYTE*NARRVFVPVDTKC 447
           P+L+ + CT  L    N R V++  DT C
Sbjct: 40  PSLKSWTCTKGLLCLTNQRLVYIAKDTDC 68


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 511 VHRSFTQSETQGECLFQLTLSALLVRAVADSXGGRATSHRVERL 380
           +HR+FTQS TQ +  F    S L  R   +      T  R+ER+
Sbjct: 800 IHRTFTQSFTQKQLEFTKQKSLLENRISFEKQRVSDTRLRLERM 843


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,120
Number of Sequences: 5004
Number of extensions: 40206
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)