Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1889
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0034 - 253972-254916                                             29   3.0  
02_04_0413 + 22681957-22682035,22682253-22682788                       29   3.9  
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486     29   5.2  
03_04_0125 - 17487746-17487847,17488025-17488555,17488834-174891...    28   9.1  
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386...    28   9.1  

>08_01_0034 - 253972-254916
          Length = 314

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 670 LLKMGGRAHXPSGVKWLLESMD 605
           LL++ GR H P+G +WL E MD
Sbjct: 46  LLEVVGRLHLPAGERWLDEYMD 67


>02_04_0413 + 22681957-22682035,22682253-22682788
          Length = 204

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 149 CGKCSSXRCAISAARTTLLAPSPAQPCIHQPAPYRPSSFCC 27
           CG   S +CA    R     PSP+ PC+H P     +  CC
Sbjct: 78  CGAGCSEQCA-ECPRPPHPPPSPS-PCVHPPCCESAAGCCC 116


>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
          Length = 296

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 357 LFVVTSSTKRSTRCEVARPPXLSATARTRSALSVNWNKHSPCVSLCV 497
           +  V+++   ST    A PP   ATA T  AL +N N   P   LC+
Sbjct: 202 MLAVSTAGSSSTTTTSASPPPAPATAAT--ALDLNLNLPPPLAHLCL 246


>03_04_0125 -
           17487746-17487847,17488025-17488555,17488834-17489102,
           17489161-17489257,17491060-17491161,17491235-17491367,
           17491589-17491681,17491756-17491844,17493578-17493700,
           17496908-17497004,17497440-17497639
          Length = 611

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 360 IESAISSNCXPTSLICPVVLE 298
           ++SA   +C P++ ICP+ LE
Sbjct: 559 LQSATGDSCVPSAFICPISLE 579


>02_01_0533 +
           3868230-3868564,3869040-3869098,3869187-3869225,
           3869629-3869729,3870288-3870400,3870976-3871075,
           3871170-3871316,3871442-3871502,3871616-3871713,
           3871786-3871928,3872221-3872304,3872389-3872478,
           3872574-3872628
          Length = 474

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +3

Query: 411 PPXLSATARTRSALSVNWNKHSPCVSLCVKDRCTYIHLKGG 533
           PP  S   R    L+  W+    CV+ CV D      LK G
Sbjct: 49  PPEFSGLFRVGVRLAEGWDVFVRCVTSCVADTAPRFRLKLG 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,662,349
Number of Sequences: 37544
Number of extensions: 303343
Number of successful extensions: 834
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)