Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1889
(750 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK026946-1|BAB15598.1| 579|Homo sapiens protein ( Homo sapiens ... 56 1e-07
AF449187-2|AAM97341.1| 579|Homo sapiens ARL6IP2 protein. 56 1e-07
AC016995-1|AAX88950.1| 579|Homo sapiens unknown protein. 56 1e-07
BC053508-1|AAH53508.1| 412|Homo sapiens ARL6IP2 protein protein. 52 2e-06
AF449187-1|AAM97342.1| 583|Homo sapiens ARL6IP2 protein. 52 2e-06
CR457153-1|CAG33434.1| 475|Homo sapiens SPG3A protein. 48 4e-05
BC010708-1|AAH10708.2| 558|Homo sapiens spastic paraplegia 3A (... 48 4e-05
AY032844-1|AAK51160.1| 475|Homo sapiens GTPase protein. 48 4e-05
AK223436-1|BAD97156.1| 558|Homo sapiens atlastin variant protein. 48 4e-05
AF444143-1|AAL37898.1| 558|Homo sapiens brain-specific GTP-bind... 48 4e-05
AF131801-1|AAD20047.1| 475|Homo sapiens Unknown protein. 48 4e-05
BC077727-1|AAH77727.1| 541|Homo sapiens DKFZP564J0863 protein p... 46 1e-04
AK097588-1|BAC05111.1| 567|Homo sapiens protein ( Homo sapiens ... 46 1e-04
AK023383-1|BAB14552.1| 541|Homo sapiens protein ( Homo sapiens ... 46 1e-04
>AK026946-1|BAB15598.1| 579|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23293 fis, clone HEP10514. ).
Length = 579
Score = 56.0 bits (129), Expect = 1e-07
Identities = 35/146 (23%), Positives = 57/146 (39%)
Frame = +2
Query: 11 AIHAFDSKKKMGGKELADGYKAXXXXXXXXXXXXXRSHNEXKNIYRMIGTPVVFATVAVL 190
AI F S KKMGG E Y+ HN+ KNI+ TP V
Sbjct: 425 AIKQFRSVKKMGGDEFCRRYQDQLEAEIEETYANFIKHNDGKNIFYAARTPATLFAVMFA 484
Query: 191 AYMLVVLGNMXXXXXXXXXXXXXXXXXXXMIAVWIYSRTTGQMRDVGXQLDEIADSIRSY 370
Y++ L + W Y + +G+ R++G +D+IA+++
Sbjct: 485 MYIISGLTGFIGLNSIAVLCNLVMELALIFLCTWAYVKYSGEFREIGTVIDQIAETLWEQ 544
Query: 371 ILNQAFXSMRSRATAXAVGYGADKKR 448
+ ++ F R R A+ A ++R
Sbjct: 545 VFSKLFEVTRRRMVHRALS-SAQRQR 569
>AF449187-2|AAM97341.1| 579|Homo sapiens ARL6IP2 protein.
Length = 579
Score = 56.0 bits (129), Expect = 1e-07
Identities = 35/146 (23%), Positives = 57/146 (39%)
Frame = +2
Query: 11 AIHAFDSKKKMGGKELADGYKAXXXXXXXXXXXXXRSHNEXKNIYRMIGTPVVFATVAVL 190
AI F S KKMGG E Y+ HN+ KNI+ TP V
Sbjct: 425 AIKQFRSVKKMGGDEFCRRYQDQLEAEIEETYANFIKHNDGKNIFYAARTPATLFAVMFA 484
Query: 191 AYMLVVLGNMXXXXXXXXXXXXXXXXXXXMIAVWIYSRTTGQMRDVGXQLDEIADSIRSY 370
Y++ L + W Y + +G+ R++G +D+IA+++
Sbjct: 485 MYIISGLTGFIGLNSIAVLCNLVMGLALIFLCTWAYVKYSGEFREIGTVIDQIAETLWEQ 544
Query: 371 ILNQAFXSMRSRATAXAVGYGADKKR 448
+ ++ F R R A+ A ++R
Sbjct: 545 VFSKLFEVTRRRMVHRALS-SAQRQR 569
>AC016995-1|AAX88950.1| 579|Homo sapiens unknown protein.
Length = 579
Score = 56.0 bits (129), Expect = 1e-07
Identities = 35/146 (23%), Positives = 57/146 (39%)
Frame = +2
Query: 11 AIHAFDSKKKMGGKELADGYKAXXXXXXXXXXXXXRSHNEXKNIYRMIGTPVVFATVAVL 190
AI F S KKMGG E Y+ HN+ KNI+ TP V
Sbjct: 425 AIKQFRSVKKMGGDEFCRRYQDQLEAEIEETYANFIKHNDGKNIFYAARTPATLFAVMFA 484
Query: 191 AYMLVVLGNMXXXXXXXXXXXXXXXXXXXMIAVWIYSRTTGQMRDVGXQLDEIADSIRSY 370
Y++ L + W Y + +G+ R++G +D+IA+++
Sbjct: 485 MYIISGLTGFIGLNSIAVLCNLVMGLALIFLCTWAYVKYSGEFREIGTVIDQIAETLWEQ 544
Query: 371 ILNQAFXSMRSRATAXAVGYGADKKR 448
+ ++ F R R A+ A ++R
Sbjct: 545 VFSKLFEVTRRRMVHRALS-SAQRQR 569
>BC053508-1|AAH53508.1| 412|Homo sapiens ARL6IP2 protein protein.
Length = 412
Score = 52.0 bits (119), Expect = 2e-06
Identities = 30/122 (24%), Positives = 47/122 (38%)
Frame = +2
Query: 11 AIHAFDSKKKMGGKELADGYKAXXXXXXXXXXXXXRSHNEXKNIYRMIGTPVVFATVAVL 190
AI F S KKMGG E Y+ HN+ KNI+ TP V
Sbjct: 254 AIKQFRSVKKMGGDEFCRRYQDQLEAEIEETYANFIKHNDGKNIFYAARTPATLFAVMFA 313
Query: 191 AYMLVVLGNMXXXXXXXXXXXXXXXXXXXMIAVWIYSRTTGQMRDVGXQLDEIADSIRSY 370
Y++ L + W Y + +G+ R++G +D+IA+++
Sbjct: 314 MYIISGLTGFIGLNSIAVLCNLVMGLALIFLCTWAYVKYSGEFREIGTVIDQIAETLWEQ 373
Query: 371 IL 376
+L
Sbjct: 374 VL 375
>AF449187-1|AAM97342.1| 583|Homo sapiens ARL6IP2 protein.
Length = 583
Score = 52.0 bits (119), Expect = 2e-06
Identities = 30/122 (24%), Positives = 47/122 (38%)
Frame = +2
Query: 11 AIHAFDSKKKMGGKELADGYKAXXXXXXXXXXXXXRSHNEXKNIYRMIGTPVVFATVAVL 190
AI F S KKMGG E Y+ HN+ KNI+ TP V
Sbjct: 425 AIKQFRSVKKMGGDEFCRRYQDQLEAEIEETYANFIKHNDGKNIFYAARTPATLFAVMFA 484
Query: 191 AYMLVVLGNMXXXXXXXXXXXXXXXXXXXMIAVWIYSRTTGQMRDVGXQLDEIADSIRSY 370
Y++ L + W Y + +G+ R++G +D+IA+++
Sbjct: 485 MYIISGLTGFIGLNSIAVLCNLVMGLALIFLCTWAYVKYSGEFREIGTVIDQIAETLWEQ 544
Query: 371 IL 376
+L
Sbjct: 545 VL 546
>CR457153-1|CAG33434.1| 475|Homo sapiens SPG3A protein.
Length = 475
Score = 48.0 bits (109), Expect = 4e-05
Identities = 25/118 (21%), Positives = 46/118 (38%)
Frame = +2
Query: 8 KAIHAFDSKKKMGGKELADGYKAXXXXXXXXXXXXXRSHNEXKNIYRMIGTPVVFATVAV 187
+++ F KKMGG+E + Y HN+ KNI+ TP V
Sbjct: 314 ESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAARTPATLFVVIF 373
Query: 188 LAYMLVVLGNMXXXXXXXXXXXXXXXXXXXMIAVWIYSRTTGQMRDVGXQLDEIADSI 361
+ Y++ + + W Y R +G+ R++G +D++A ++
Sbjct: 374 ITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAAAL 431
>BC010708-1|AAH10708.2| 558|Homo sapiens spastic paraplegia 3A
(autosomal dominant) protein.
Length = 558
Score = 48.0 bits (109), Expect = 4e-05
Identities = 25/118 (21%), Positives = 46/118 (38%)
Frame = +2
Query: 8 KAIHAFDSKKKMGGKELADGYKAXXXXXXXXXXXXXRSHNEXKNIYRMIGTPVVFATVAV 187
+++ F KKMGG+E + Y HN+ KNI+ TP V
Sbjct: 397 ESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAARTPATLFVVIF 456
Query: 188 LAYMLVVLGNMXXXXXXXXXXXXXXXXXXXMIAVWIYSRTTGQMRDVGXQLDEIADSI 361
+ Y++ + + W Y R +G+ R++G +D++A ++
Sbjct: 457 ITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAAAL 514
>AY032844-1|AAK51160.1| 475|Homo sapiens GTPase protein.
Length = 475
Score = 48.0 bits (109), Expect = 4e-05
Identities = 25/118 (21%), Positives = 46/118 (38%)
Frame = +2
Query: 8 KAIHAFDSKKKMGGKELADGYKAXXXXXXXXXXXXXRSHNEXKNIYRMIGTPVVFATVAV 187
+++ F KKMGG+E + Y HN+ KNI+ TP V
Sbjct: 314 ESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAARTPATLFVVIF 373
Query: 188 LAYMLVVLGNMXXXXXXXXXXXXXXXXXXXMIAVWIYSRTTGQMRDVGXQLDEIADSI 361
+ Y++ + + W Y R +G+ R++G +D++A ++
Sbjct: 374 ITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAAAL 431
>AK223436-1|BAD97156.1| 558|Homo sapiens atlastin variant protein.
Length = 558
Score = 48.0 bits (109), Expect = 4e-05
Identities = 25/118 (21%), Positives = 46/118 (38%)
Frame = +2
Query: 8 KAIHAFDSKKKMGGKELADGYKAXXXXXXXXXXXXXRSHNEXKNIYRMIGTPVVFATVAV 187
+++ F KKMGG+E + Y HN+ KNI+ TP V
Sbjct: 397 ESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAARTPATLFVVIF 456
Query: 188 LAYMLVVLGNMXXXXXXXXXXXXXXXXXXXMIAVWIYSRTTGQMRDVGXQLDEIADSI 361
+ Y++ + + W Y R +G+ R++G +D++A ++
Sbjct: 457 ITYVIAGVTGFIGLDIVASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAAAL 514
>AF444143-1|AAL37898.1| 558|Homo sapiens brain-specific GTP-binding
protein protein.
Length = 558
Score = 48.0 bits (109), Expect = 4e-05
Identities = 25/118 (21%), Positives = 46/118 (38%)
Frame = +2
Query: 8 KAIHAFDSKKKMGGKELADGYKAXXXXXXXXXXXXXRSHNEXKNIYRMIGTPVVFATVAV 187
+++ F KKMGG+E + Y HN+ KNI+ TP V
Sbjct: 397 ESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAARTPATLFVVIF 456
Query: 188 LAYMLVVLGNMXXXXXXXXXXXXXXXXXXXMIAVWIYSRTTGQMRDVGXQLDEIADSI 361
+ Y++ + + W Y R +G+ R++G +D++A ++
Sbjct: 457 ITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAAAL 514
>AF131801-1|AAD20047.1| 475|Homo sapiens Unknown protein.
Length = 475
Score = 48.0 bits (109), Expect = 4e-05
Identities = 25/118 (21%), Positives = 46/118 (38%)
Frame = +2
Query: 8 KAIHAFDSKKKMGGKELADGYKAXXXXXXXXXXXXXRSHNEXKNIYRMIGTPVVFATVAV 187
+++ F KKMGG+E + Y HN+ KNI+ TP V
Sbjct: 314 ESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAARTPATLFVVIF 373
Query: 188 LAYMLVVLGNMXXXXXXXXXXXXXXXXXXXMIAVWIYSRTTGQMRDVGXQLDEIADSI 361
+ Y++ + + W Y R +G+ R++G +D++A ++
Sbjct: 374 ITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAAAL 431
>BC077727-1|AAH77727.1| 541|Homo sapiens DKFZP564J0863 protein
protein.
Length = 541
Score = 46.0 bits (104), Expect = 1e-04
Identities = 33/125 (26%), Positives = 47/125 (37%)
Frame = +2
Query: 11 AIHAFDSKKKMGGKELADGYKAXXXXXXXXXXXXXRSHNEXKNIYRMIGTPVVFATVAVL 190
A+ F KKMGGK+ + Y+ HN KN++ TP V T V
Sbjct: 394 ALDHFKKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFRTPAVLFTGIVA 453
Query: 191 AYMLVVLGNMXXXXXXXXXXXXXXXXXXXMIAVWIYSRTTGQMRDVGXQLDEIADSIRSY 370
Y+ L + W Y R +GQ R++G +D A +Y
Sbjct: 454 LYIASGLTGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSGQYRELGGAIDFGA----AY 509
Query: 371 ILNQA 385
+L QA
Sbjct: 510 VLEQA 514
>AK097588-1|BAC05111.1| 567|Homo sapiens protein ( Homo sapiens
cDNA FLJ40269 fis, clone TESTI2026597. ).
Length = 567
Score = 46.0 bits (104), Expect = 1e-04
Identities = 33/125 (26%), Positives = 47/125 (37%)
Frame = +2
Query: 11 AIHAFDSKKKMGGKELADGYKAXXXXXXXXXXXXXRSHNEXKNIYRMIGTPVVFATVAVL 190
A+ F KKMGGK+ + Y+ HN KN++ TP V T V
Sbjct: 420 ALDHFKKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFRTPAVLFTGIVA 479
Query: 191 AYMLVVLGNMXXXXXXXXXXXXXXXXXXXMIAVWIYSRTTGQMRDVGXQLDEIADSIRSY 370
Y+ L + W Y R +GQ R++G +D A +Y
Sbjct: 480 LYIASGLTGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSGQYRELGGAIDFGA----AY 535
Query: 371 ILNQA 385
+L QA
Sbjct: 536 VLEQA 540
>AK023383-1|BAB14552.1| 541|Homo sapiens protein ( Homo sapiens
cDNA FLJ13321 fis, clone OVARC1001703, weakly similar to
Mus musculus ARL-6 interacting protein-2 (Aip-2) mRNA.
).
Length = 541
Score = 46.0 bits (104), Expect = 1e-04
Identities = 33/125 (26%), Positives = 47/125 (37%)
Frame = +2
Query: 11 AIHAFDSKKKMGGKELADGYKAXXXXXXXXXXXXXRSHNEXKNIYRMIGTPVVFATVAVL 190
A+ F KKMGGK+ + Y+ HN KN++ TP V T V
Sbjct: 394 ALDHFKKTKKMGGKDFSFRYQQELEEEIKELYENFCKHNGSKNVFSTFRTPAVLFTGIVA 453
Query: 191 AYMLVVLGNMXXXXXXXXXXXXXXXXXXXMIAVWIYSRTTGQMRDVGXQLDEIADSIRSY 370
Y+ L + W Y R +GQ R++G +D A +Y
Sbjct: 454 LYIASGLTGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSGQYRELGGAIDFGA----AY 509
Query: 371 ILNQA 385
+L QA
Sbjct: 510 VLEQA 514
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,071,224
Number of Sequences: 237096
Number of extensions: 1651982
Number of successful extensions: 4210
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4182
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -