Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1889
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF303255-1|AAG50213.1| 573|Caenorhabditis elegans putative guan... 46 4e-05
AC024817-7|AAK68527.1| 573|Caenorhabditis elegans Hypothetical ... 46 4e-05
AC024817-8|AAU05551.1| 535|Caenorhabditis elegans Hypothetical ... 44 2e-04
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 30 1.5
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr... 30 1.5
U97407-6|AAB52481.1| 751|Caenorhabditis elegans Tyrosinase prot... 28 6.2
Z82062-2|CAB04890.1| 489|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 28 8.1
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 28 8.1
>AF303255-1|AAG50213.1| 573|Caenorhabditis elegans putative
guanylate-binding protein protein.
Length = 573
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/114 (21%), Positives = 45/114 (39%)
Frame = +2
Query: 5 NKAIHAFDSKKKMGGKELADGYKAXXXXXXXXXXXXXRSHNEXKNIYRMIGTPVVFATVA 184
N AI F + +KMGG + + + N KN+++ + TP V T+
Sbjct: 407 NIAIREFRNARKMGGVDFSMQFLERLESDLQESYENYLKVNNGKNLFKSMRTPTVLVTLM 466
Query: 185 VLAYMLVVLGNMXXXXXXXXXXXXXXXXXXXMIAVWIYSRTTGQMRDVGXQLDE 346
++ Y+ + + VW YSR +G +R+ G +D+
Sbjct: 467 IIDYIFQEFFQLIGLDFIAGLCSSVLCLVIGALGVWAYSRYSGHLREAGGYVDD 520
>AC024817-7|AAK68527.1| 573|Caenorhabditis elegans Hypothetical
protein Y54G2A.2a protein.
Length = 573
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/114 (21%), Positives = 45/114 (39%)
Frame = +2
Query: 5 NKAIHAFDSKKKMGGKELADGYKAXXXXXXXXXXXXXRSHNEXKNIYRMIGTPVVFATVA 184
N AI F + +KMGG + + + N KN+++ + TP V T+
Sbjct: 407 NIAIREFRNARKMGGVDFSMQFLERLESDLQESYENYLKVNNGKNLFKSMRTPTVLVTLM 466
Query: 185 VLAYMLVVLGNMXXXXXXXXXXXXXXXXXXXMIAVWIYSRTTGQMRDVGXQLDE 346
++ Y+ + + VW YSR +G +R+ G +D+
Sbjct: 467 IIDYIFQEFFQLIGLDFIAGLCSSVLCLVIGALGVWAYSRYSGHLREAGGYVDD 520
>AC024817-8|AAU05551.1| 535|Caenorhabditis elegans Hypothetical
protein Y54G2A.2b protein.
Length = 535
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/116 (21%), Positives = 45/116 (38%)
Frame = +2
Query: 5 NKAIHAFDSKKKMGGKELADGYKAXXXXXXXXXXXXXRSHNEXKNIYRMIGTPVVFATVA 184
N AI F + +KMGG + + + N KN+++ + TP V T+
Sbjct: 407 NIAIREFRNARKMGGVDFSMQFLERLESDLQESYENYLKVNNGKNLFKSMRTPTVLVTLM 466
Query: 185 VLAYMLVVLGNMXXXXXXXXXXXXXXXXXXXMIAVWIYSRTTGQMRDVGXQLDEIA 352
++ Y+ + + VW YSR +G +R+ G + I+
Sbjct: 467 IIDYIFQEFFQLIGLDFIAGLCSSVLCLVIGALGVWAYSRYSGHLREAGGYIFRIS 522
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -2
Query: 116 SAARTTLLAPSPAQPCIHQPAPYRPSSFCCQTRVLPC 6
SA + AP P PC QPAP C R +PC
Sbjct: 158 SAPACCVAAPVPTNPCC-QPAPRPAPCVCSAPRPVPC 193
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -2
Query: 89 PSPAQPCIHQPAPYRPSSF-CCQTRVLP 9
P+PA PC P P PS CC+ +P
Sbjct: 114 PAPAAPCCPPPPPPTPSPLVCCKQAPVP 141
>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical
protein T26A5.5a protein.
Length = 1076
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 607 DXYDVNAPPTLRYKFQGLSIVTTDAPPFKCMYVHRSFTQS 488
D YD PPT R K++ +S+ T + P H+ + S
Sbjct: 828 DHYDGQKPPTKRAKYEAISVDTYETPSSSRNKEHKEYRPS 867
>U97407-6|AAB52481.1| 751|Caenorhabditis elegans Tyrosinase protein
4 protein.
Length = 751
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = -2
Query: 155 RSCGKCSSXR---CAISAARTTLLAPSPAQPCIHQPAPYRPSSFCC 27
+SC KC R C T P+PAQ C + + + CC
Sbjct: 531 KSCNKCGRSRAQECGGGGTTVTTTTPAPAQQCDNSDGCFN-ENVCC 575
>Z82062-2|CAB04890.1| 489|Caenorhabditis elegans Hypothetical
protein W02A11.3 protein.
Length = 489
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 116 SAARTTLLAPSPAQPCIHQPAPYRPSS 36
+AA P P QP +H P P RP +
Sbjct: 320 AAAAVPQPPPPPPQPTLHAPVPIRPQN 346
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -3
Query: 526 FKCMYVHRSFTQSETQGEC-LFQLTLSALLVR-AVADSXGG 410
+ M VH + T+ E +G C Q L++LL+R A+A+ GG
Sbjct: 1170 YNVMMVHETGTEVEMRGRCSAGQKMLASLLIRIALAEVFGG 1210
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein
T04H1.4a protein.
Length = 1298
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -3
Query: 526 FKCMYVHRSFTQSETQGEC-LFQLTLSALLVR-AVADSXGG 410
+ M VH + T+ E +G C Q L++LL+R A+A+ GG
Sbjct: 1156 YNVMMVHETGTEVEMRGRCSAGQKMLASLLIRIALAEVFGG 1196
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -3
Query: 526 FKCMYVHRSFTQSETQGEC-LFQLTLSALLVR-AVADSXGG 410
+ M VH + T+ E +G C Q L++LL+R A+A+ GG
Sbjct: 1156 YNVMMVHETGTEVEMRGRCSAGQKMLASLLIRIALAEVFGG 1196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,771,609
Number of Sequences: 27780
Number of extensions: 245458
Number of successful extensions: 688
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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