Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1888
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...   163   2e-41
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    28   1.6  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    28   1.6  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    27   2.2  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    26   5.0  
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    25   8.7  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    25   8.7  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   8.7  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score =  163 bits (397), Expect = 2e-41
 Identities = 92/227 (40%), Positives = 133/227 (58%), Gaps = 7/227 (3%)
 Frame = +1

Query: 91  LSGLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRY----ENP 258
           L G+  L  P  NK  AFT EERQ   I   LPP V+T ++QV+ C    D+Y    + P
Sbjct: 13  LKGVTLLNSPRYNKDTAFTPEERQKFEISSRLPPIVETLQQQVDRC---YDQYKAIGDEP 69

Query: 259 LNKYIYLMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITI- 435
           L K +YL  L   N+ LFY  ++ ++ EM+PI+YTPT G A ++F  +YR P G ++ I 
Sbjct: 70  LQKNLYLSQLSVTNQTLFYALISQHLIEMIPIIYTPTEGDAIKQFSDIYRYPEGCYLDID 129

Query: 436 -HDKGHVYDVLKNWPETD-VRAIVVTDGERILGLGDLGACGMGIPVGKLALYTALGGIKP 609
            +D  ++   L  + ++D V  I++TD E ILG+GD G  G+ I V K  L T   G+ P
Sbjct: 130 HNDLSYIKQQLSEFGKSDSVEYIIITDSEGILGIGDQGVGGVLISVAKGHLMTLCAGLDP 189

Query: 610 HQCLPITIDVGTNTQSMLDDPLYIGLRQXRVRGPDYDELLXXFMPAV 750
           ++ LPI +DVGTN ++   +  Y+GLR+ RVRG  YD  L   + A+
Sbjct: 190 NRFLPIVLDVGTNNETHRKNHQYMGLRKDRVRGEQYDSFLDNVIKAI 236


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +3

Query: 528 PGRFGRVRDGHPCGQTRALHRARRHQASSVSAHHYRRGYEHPV 656
           P +   + D H C QT   H  R HQA       Y R  E P+
Sbjct: 128 PDQVYHLIDNHSCIQTAVSHLLRNHQALFKYLCDYLRSGEFPL 170


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 678 VQRVVQHRLG-VRTHVDSDGQTLMRLDASERGVEREFAHRD 559
           V  VV++  G V T V SDG   +RLD   RG+ + F H D
Sbjct: 488 VSGVVENVRGSVITMVSSDG---LRLDVPSRGLRKRFRHGD 525


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -1

Query: 660 HRLGVRTHVDSDGQTLMRLDASERGVE 580
           +RLGV+ H D+D  TLM  D + +G+E
Sbjct: 269 NRLGVQEHTDADALTLMSQD-NVKGLE 294


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 412 PRGLFITIHDKGHVYDVLKNWPETDVRA 495
           P GL+I + +K   +D  + W + D RA
Sbjct: 740 PPGLYIPLAEKRTAWDCFERWIQVDPRA 767


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -1

Query: 567 HRDAHPARAQIAQAQNTFSVGYNNGADVRLRPVLKNIVYMSLIVDRDEEA 418
           H D +P   + A+  +   + YN   DV+LR    +  +  L   R EEA
Sbjct: 37  HPDKNPNDPKAAEKFHMLQLAYNALIDVQLRKAYDSERFAKLARKRREEA 86


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 576 RALHRARRHQASSVSAHHYRRGYEHPV 656
           R  H+  RH +S++++   R GY+ P+
Sbjct: 276 RRRHKRSRHNSSNLASTPKRNGYKQPL 302


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 257 HLTSTSILWGSWTAMSICS--TVSSRITW 337
           HL  TS++ G+W  +   S   VS  +TW
Sbjct: 71  HLNHTSVMTGNWNILPYPSFGKVSPNVTW 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,161,247
Number of Sequences: 5004
Number of extensions: 69679
Number of successful extensions: 218
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)