Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1888
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-11|CAB54452.1| 620|Caenorhabditis elegans Hypothetical... 284 5e-77
Z83106-1|CAB05493.1| 359|Caenorhabditis elegans Hypothetical pr... 29 2.7
U40946-3|AAO91681.1| 851|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 28 6.2
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 28 6.2
Z81066-2|CAB02971.1| 239|Caenorhabditis elegans Hypothetical pr... 28 8.1
>AL110490-11|CAB54452.1| 620|Caenorhabditis elegans Hypothetical
protein Y48B6A.12 protein.
Length = 620
Score = 284 bits (696), Expect = 5e-77
Identities = 131/219 (59%), Positives = 162/219 (73%), Gaps = 2/219 (0%)
Frame = +1
Query: 97 GLDHLKHPGLNKGMAFTIEERQLLGIHGLLPPRVKTQEEQVELCKLSIDRYENPLNKYIY 276
G+D LK PGLNKGMAF++ ERQ LG+HGLLPP T+E+Q + + + L KYI
Sbjct: 51 GIDLLKSPGLNKGMAFSLHERQYLGVHGLLPPAFMTEEQQAYRIITKLRQQPDNLAKYIQ 110
Query: 277 LMGLLDRNEHLFYRFVADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIHDK--GH 450
L L DRNE L+YR + DNV E+MPIVYTPTVG ACQ FG +YR P+GL+ITI+D
Sbjct: 111 LDSLQDRNEKLYYRVLCDNVKELMPIVYTPTVGQACQHFGFIYRNPKGLYITINDNSISK 170
Query: 451 VYDVLKNWPETDVRAIVVTDGERILGLGDLGACGMGIPVGKLALYTALGGIKPHQCLPIT 630
++ +L NWP +VRAIV+TDGERILGLGDLG G+GIPVGKLALY AL GI+P CLP+
Sbjct: 171 IHQILANWPTENVRAIVITDGERILGLGDLGTYGIGIPVGKLALYVALAGIRPEWCLPVI 230
Query: 631 IDVGTNTQSMLDDPLYIGLRQXRVRGPDYDELLXXFMPA 747
+DVGT+ +L+DP Y GLR+ RVRGP+YD L+ FM A
Sbjct: 231 LDVGTDNSELLNDPFYTGLRRKRVRGPEYDTLVDNFMKA 269
>Z83106-1|CAB05493.1| 359|Caenorhabditis elegans Hypothetical
protein F22B8.1 protein.
Length = 359
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 257 HLTSTSILWGSWTAMSICSTVS 322
H TS ++LW SW+A+ I +T+S
Sbjct: 200 HETSPAVLWKSWSAILILTTLS 221
>U40946-3|AAO91681.1| 851|Caenorhabditis elegans Hypothetical
protein W05H9.2 protein.
Length = 851
Score = 29.1 bits (62), Expect = 3.5
Identities = 26/82 (31%), Positives = 38/82 (46%)
Frame = -1
Query: 744 GHELVEQLVVVGAAHASLPEPDVQRVVQHRLGVRTHVDSDGQTLMRLDASERGVEREFAH 565
G E E G+ +A+ P+V R + R V D D + + E GVER+F
Sbjct: 729 GRESEETGSETGSDYATDEGPNVGRR-RVRRNVELESDDDDEDEEEDEEEEDGVERQFDP 787
Query: 564 RDAHPARAQIAQAQNTFSVGYN 499
+A A++A NTFS+ N
Sbjct: 788 EEA----ARVAFLLNTFSMNGN 805
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +1
Query: 184 LPPRVKTQEEQVELCKLSIDRYENPLNKYIYLMGLLDRNEH 306
L ++K + ++EL + + ++E+ L+ ++ G+L RNEH
Sbjct: 1215 LTEQIKVTQAEIELHRRDLKKHESNLSDFVMKHGIL-RNEH 1254
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +1
Query: 184 LPPRVKTQEEQVELCKLSIDRYENPLNKYIYLMGLLDRNEH 306
L ++K + ++EL + + ++E+ L+ ++ G+L RNEH
Sbjct: 1215 LTEQIKVTQAEIELHRRDLKKHESNLSDFVMKHGIL-RNEH 1254
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 269 TSILWGSWTAMSICSTVS 322
TS +WG W A S C TV+
Sbjct: 52 TSAIWGDWGAWSTCPTVT 69
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 269 TSILWGSWTAMSICSTVS 322
TS +WG W A S C TV+
Sbjct: 52 TSAIWGDWGAWSTCPTVT 69
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 269 TSILWGSWTAMSICSTVS 322
TS +WG W A S C TV+
Sbjct: 52 TSAIWGDWGAWSTCPTVT 69
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 269 TSILWGSWTAMSICSTVS 322
TS +WG W A S C TV+
Sbjct: 52 TSAIWGDWGAWSTCPTVT 69
>Z81066-2|CAB02971.1| 239|Caenorhabditis elegans Hypothetical
protein F17B5.3 protein.
Length = 239
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 464 RTSYTCPLSWIVMKRPLGR 408
R + TCP WI +RP GR
Sbjct: 66 RPTRTCPRDWITFERPQGR 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,116,744
Number of Sequences: 27780
Number of extensions: 435135
Number of successful extensions: 1322
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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