Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1887
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0341 - 22507098-22507982,22508616-22508783,22518740-225188...    28   5.6  
08_02_1238 + 25486263-25487574,25488210-25489117                       28   7.4  

>11_06_0341 -
           22507098-22507982,22508616-22508783,22518740-22518893,
           22519396-22519728,22521106-22521374
          Length = 602

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 259 SRKCQHSLLQRSRFRSGCCSSQVAVIDGFT 170
           S+   H LL    + +GC    +A+ DGFT
Sbjct: 384 SKNLSHELLSAIEYLTGCSLKSLAIDDGFT 413


>08_02_1238 + 25486263-25487574,25488210-25489117
          Length = 739

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 164 LDGEAIDDSDLAGATATPKPTSLQQRMLALSGQNIDDFMKEMEEVHRKR 310
           L   A+DD D     AT     +  R  A   + +DDF+KE++ +HR R
Sbjct: 384 LPAAAVDDDDGRPPAATEVAVKMFTRDDA---KCVDDFLKEVQIIHRLR 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,564,653
Number of Sequences: 37544
Number of extensions: 202027
Number of successful extensions: 497
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)