Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1886
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32...    54   1e-07
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30...    50   1e-06
10_05_0080 - 8907628-8908182                                           28   5.6  
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011...    28   5.6  
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515...    27   9.8  

>12_01_0039 -
           319871-319914,320021-320084,320198-320263,320397-320458,
           321211-321298,321401-321461,321542-321625,322332-322630
          Length = 255

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
 Frame = +3

Query: 342 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFXKLFFDAATEEREHATKLIDYLLM 521
           C   + +QI  E  AS  Y ++ AYF  D V   GF K F +++ EER+HA KL+ Y  M
Sbjct: 91  CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150

Query: 522 RG---KLTGSVTXLITYRAP 572
           RG   +L   VT L  +  P
Sbjct: 151 RGGRVRLQSIVTPLTEFDHP 170


>11_01_0040 -
           304439-304482,304589-304652,304766-304831,305509-305640,
           305744-305804,305885-306018,306310-306654
          Length = 281

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
 Frame = +3

Query: 375 EVAASIQYLAMGAYFSIDTVNRPGFXKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 545
           E  AS  Y ++ AYF  D V   GF K F +++ EER+HA KLI Y  MRG   +L   V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193

Query: 546 TXLITYRAP 572
           T L  +  P
Sbjct: 194 TPLTEFDHP 202


>10_05_0080 - 8907628-8908182
          Length = 184

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 541 P*PTSSRTGPPAXTSRGERRITP 609
           P PTSSR+ PP+  S+ +R  +P
Sbjct: 53  PSPTSSRSSPPSCNSQADRPASP 75


>02_05_0448 -
           29100674-29100716,29100821-29100902,29101010-29101130,
           29101481-29101546,29101628-29101735,29102083-29102148,
           29102605-29102633,29102773-29102902
          Length = 214

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -1

Query: 323 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDTQKN 174
           P+I  G+  D  +  C          D KE  PH       RFF+D +KN
Sbjct: 129 PMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPH-RLQEIRRFFEDYKKN 177


>02_05_0624 -
           30451032-30451140,30451294-30451409,30451506-30451580,
           30452033-30452093,30452198-30452424
          Length = 195

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 402 AMGAYFSIDTVNRPGFXKLFFDAATEEREHATKLIDYLL 518
           A+  YF + TV  P     FF +   +RE  T L+D LL
Sbjct: 115 ALPKYFQVGTVIEPASE--FFSSRLTKRERKTTLVDELL 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,300,421
Number of Sequences: 37544
Number of extensions: 298381
Number of successful extensions: 679
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)