Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1885
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    26   5.9  
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...    25   7.8  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    25   7.8  

>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 408 DDQEVCFSLRDPNHHQAPPLMLRVRKALD 494
           D+  +  ++RDP H + PP +++ R+  D
Sbjct: 153 DNSAIISTVRDPLHPEEPPYVVQYREISD 181


>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 366 VIG-EVKLLLPSPTLSPEVSIPDLV 295
           V+G +VK++LP P    + S+PD+V
Sbjct: 183 VLGVKVKIMLPEPKTRQKKSLPDIV 207


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 477 VRKALDARDMPFQLRYIGQPDLGDK--NRPTVVRSSLDIACSGMLIEFLN 620
           ++  LD R  PF L Y G   +G+   N  T++   ++ + SG+ I  LN
Sbjct: 337 LKSCLDLRVWPFILMYFGIVGVGNGIFNYCTLIIEEINPSFSGIDISLLN 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,071
Number of Sequences: 5004
Number of extensions: 54589
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)